Hb_079902_010

Information

Type -
Description -
Location Contig79902: 8254-10176
Sequence    

Annotation

kegg
ID rcu:RCOM_Mp12
description ccmB; cytochrome c biogenesis B
nr
ID BAO50906.1
description cytochrome c biogenesis B (mitochondrion) [Hevea brasiliensis]
swissprot
ID P93280
description Putative cytochrome c biogenesis ccmB-like mitochondrial protein OS=Arabidopsis thaliana GN=CCMB PE=2 SV=2
trembl
ID W6JNC2
description Cytochrome c biogenesis B OS=Hevea brasiliensis GN=ccmB PE=4 SV=1
Gene Ontology
ID GO:0005739
description cytochrome c partial

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_079902_010 0.0 - - cytochrome c biogenesis B (mitochondrion) [Hevea brasiliensis]
2 Hb_001508_010 0.0819262235 - - conserved hypothetical protein [Ricinus communis]
3 Hb_000373_140 0.0827860615 - - PREDICTED: uncharacterized protein LOC105160092 [Sesamum indicum]
4 Hb_077242_020 0.0986756969 - - ribosomal protein S4 (mitochondrion) [Ricinus communis]
5 Hb_101462_010 0.0990598353 - - PREDICTED: probable receptor-like protein kinase At5g39030 isoform X2 [Jatropha curcas]
6 Hb_002395_040 0.1093829418 - - unknown [Populus trichocarpa]
7 Hb_004208_040 0.1147061444 - - UDP-glycosyltransferase 86A1 [Morus notabilis]
8 Hb_000879_260 0.1228294982 - - PREDICTED: F-box/kelch-repeat protein At5g43190 [Jatropha curcas]
9 Hb_001790_110 0.1250645832 - - unknown [Populus trichocarpa]
10 Hb_000907_010 0.1252135293 - - Ankyrin repeat-containing-like protein [Theobroma cacao]
11 Hb_006040_030 0.1273335655 - - hypothetical protein EUTSA_v10001274mg [Eutrema salsugineum]
12 Hb_002553_030 0.1304729039 - - hypothetical protein POPTR_0008s16550g [Populus trichocarpa]
13 Hb_000123_070 0.1312935497 - - PREDICTED: terpene synthase 10-like [Jatropha curcas]
14 Hb_007044_030 0.1337018421 - - Os06g0273400 [Oryza sativa Japonica Group]
15 Hb_004987_040 0.1370028933 - - PREDICTED: uncharacterized protein LOC105800880, partial [Gossypium raimondii]
16 Hb_131816_010 0.1407977905 - - PREDICTED: subtilisin-like protease SBT1.7 [Jatropha curcas]
17 Hb_006040_020 0.1409618171 - - ATPase subunit 8 (mitochondrion) [Hevea brasiliensis]
18 Hb_020154_010 0.1436038977 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
19 Hb_003963_030 0.1440532147 - - psbB [Jatropha curcas]
20 Hb_012163_050 0.144828126 - - ATPase subunit [Medicago truncatula]

Gene co-expression network

sample Hb_079902_010 Hb_079902_010 Hb_001508_010 Hb_001508_010 Hb_079902_010--Hb_001508_010 Hb_000373_140 Hb_000373_140 Hb_079902_010--Hb_000373_140 Hb_077242_020 Hb_077242_020 Hb_079902_010--Hb_077242_020 Hb_101462_010 Hb_101462_010 Hb_079902_010--Hb_101462_010 Hb_002395_040 Hb_002395_040 Hb_079902_010--Hb_002395_040 Hb_004208_040 Hb_004208_040 Hb_079902_010--Hb_004208_040 Hb_001508_010--Hb_000373_140 Hb_001508_010--Hb_101462_010 Hb_002553_030 Hb_002553_030 Hb_001508_010--Hb_002553_030 Hb_002551_030 Hb_002551_030 Hb_001508_010--Hb_002551_030 Hb_001508_010--Hb_077242_020 Hb_000373_140--Hb_101462_010 Hb_000373_140--Hb_004208_040 Hb_004987_040 Hb_004987_040 Hb_000373_140--Hb_004987_040 Hb_004375_020 Hb_004375_020 Hb_000373_140--Hb_004375_020 Hb_000123_070 Hb_000123_070 Hb_000373_140--Hb_000123_070 Hb_041813_030 Hb_041813_030 Hb_077242_020--Hb_041813_030 Hb_006040_030 Hb_006040_030 Hb_077242_020--Hb_006040_030 Hb_042463_070 Hb_042463_070 Hb_077242_020--Hb_042463_070 Hb_077242_020--Hb_101462_010 Hb_156746_010 Hb_156746_010 Hb_077242_020--Hb_156746_010 Hb_101462_010--Hb_000123_070 Hb_101462_010--Hb_004208_040 Hb_101462_010--Hb_004987_040 Hb_101462_010--Hb_004375_020 Hb_000907_010 Hb_000907_010 Hb_002395_040--Hb_000907_010 Hb_020154_010 Hb_020154_010 Hb_002395_040--Hb_020154_010 Hb_025628_010 Hb_025628_010 Hb_002395_040--Hb_025628_010 Hb_000540_180 Hb_000540_180 Hb_002395_040--Hb_000540_180 Hb_006663_080 Hb_006663_080 Hb_002395_040--Hb_006663_080 Hb_002395_040--Hb_000373_140 Hb_004208_040--Hb_004987_040 Hb_003144_040 Hb_003144_040 Hb_004208_040--Hb_003144_040 Hb_131816_010 Hb_131816_010 Hb_004208_040--Hb_131816_010 Hb_010172_020 Hb_010172_020 Hb_004208_040--Hb_010172_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0294264 0.237183 0.0678025 0.104343 0.0295523 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0215517 5.87661

CAGE analysis