Hb_079902_030

Information

Type -
Description -
Location Contig79902: 49370-50323
Sequence    

Annotation

kegg
ID rcu:RCOM_1623630
description hypothetical protein
nr
ID XP_002519967.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9S1U8
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1623630 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_079902_030 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_016354_010 0.0213210744 - - -
3 Hb_002042_240 0.0308326874 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
4 Hb_012235_010 0.0571980099 - - PREDICTED: uncharacterized protein LOC104094989 [Nicotiana tomentosiformis]
5 Hb_002850_030 0.0575820501 - - -
6 Hb_012807_090 0.1717999897 - - PREDICTED: uncharacterized protein LOC100267173 [Vitis vinifera]
7 Hb_004951_050 0.1794324885 - - conserved hypothetical protein [Ricinus communis]
8 Hb_014929_010 0.1831491011 - - -
9 Hb_000143_070 0.1912594606 - - -
10 Hb_000300_460 0.1978361333 - - Mavicyanin, putative [Ricinus communis]
11 Hb_003279_010 0.2009942875 - - PREDICTED: uncharacterized protein LOC105800880, partial [Gossypium raimondii]
12 Hb_121954_010 0.2012590864 - - PREDICTED: uncharacterized protein LOC105774125 [Gossypium raimondii]
13 Hb_074822_010 0.2013347799 - - PREDICTED: uncharacterized protein LOC104088736 isoform X2 [Nicotiana tomentosiformis]
14 Hb_005379_010 0.2030676522 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
15 Hb_000646_030 0.2035879992 - - hypothetical protein PRUPE_ppa015000mg [Prunus persica]
16 Hb_025662_020 0.2036204551 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
17 Hb_003797_030 0.2037542401 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
18 Hb_038508_010 0.2183833545 - - PREDICTED: uncharacterized protein LOC105638675 [Jatropha curcas]
19 Hb_000155_240 0.228045416 - - PREDICTED: uncharacterized protein LOC104888642 [Beta vulgaris subsp. vulgaris]
20 Hb_000789_140 0.2321192278 - - PREDICTED: uncharacterized protein LOC105650390, partial [Jatropha curcas]

Gene co-expression network

sample Hb_079902_030 Hb_079902_030 Hb_016354_010 Hb_016354_010 Hb_079902_030--Hb_016354_010 Hb_002042_240 Hb_002042_240 Hb_079902_030--Hb_002042_240 Hb_012235_010 Hb_012235_010 Hb_079902_030--Hb_012235_010 Hb_002850_030 Hb_002850_030 Hb_079902_030--Hb_002850_030 Hb_012807_090 Hb_012807_090 Hb_079902_030--Hb_012807_090 Hb_004951_050 Hb_004951_050 Hb_079902_030--Hb_004951_050 Hb_016354_010--Hb_012235_010 Hb_016354_010--Hb_002042_240 Hb_016354_010--Hb_002850_030 Hb_016354_010--Hb_012807_090 Hb_016354_010--Hb_004951_050 Hb_002042_240--Hb_002850_030 Hb_002042_240--Hb_012235_010 Hb_002042_240--Hb_012807_090 Hb_002042_240--Hb_004951_050 Hb_012235_010--Hb_002850_030 Hb_038508_010 Hb_038508_010 Hb_012235_010--Hb_038508_010 Hb_012235_010--Hb_012807_090 Hb_002850_030--Hb_012807_090 Hb_002850_030--Hb_004951_050 Hb_012807_090--Hb_004951_050 Hb_014929_010 Hb_014929_010 Hb_012807_090--Hb_014929_010 Hb_000143_070 Hb_000143_070 Hb_012807_090--Hb_000143_070 Hb_000300_460 Hb_000300_460 Hb_012807_090--Hb_000300_460 Hb_003279_010 Hb_003279_010 Hb_012807_090--Hb_003279_010 Hb_121954_010 Hb_121954_010 Hb_012807_090--Hb_121954_010 Hb_004951_050--Hb_014929_010 Hb_004951_050--Hb_000143_070 Hb_004951_050--Hb_000300_460 Hb_004951_050--Hb_003279_010 Hb_004951_050--Hb_121954_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.155589 0 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0.207097

CAGE analysis