Hb_079955_010

Information

Type transcription factor
Description TF Family: MYB-related
Location Contig79955: 342-1281
Sequence    

Annotation

kegg
ID pop:POPTR_0005s24550g
description POPTRDRAFT_559693; hypothetical protein
nr
ID XP_011025983.1
description PREDICTED: myb-related protein Myb4-like [Populus euphratica]
swissprot
ID Q9M157
description MYB-like transcription factor ETC3 OS=Arabidopsis thaliana GN=ETC3 PE=2 SV=1
trembl
ID A0A067JRM0
description MYB family protein OS=Jatropha curcas GN=JCGZ_17695 PE=4 SV=1
Gene Ontology
ID GO:0005488
description myb-related protein myb4-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_58645: 999-1277
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_079955_010 0.0 transcription factor TF Family: MYB-related PREDICTED: myb-related protein Myb4-like [Populus euphratica]
2 Hb_151281_010 0.0439881569 - - PREDICTED: LOW QUALITY PROTEIN: probable L-type lectin-domain containing receptor kinase S.5 [Jatropha curcas]
3 Hb_003090_060 0.0666871777 - - PAR1 protein [Theobroma cacao]
4 Hb_002621_030 0.0794371355 - - hypothetical protein CISIN_1g006155mg [Citrus sinensis]
5 Hb_131591_010 0.0981193888 - - PREDICTED: cytochrome P450 83B1-like [Jatropha curcas]
6 Hb_011791_010 0.1058027264 - - PREDICTED: cytochrome P450 83B1-like [Jatropha curcas]
7 Hb_111985_060 0.1065331412 - - PREDICTED: cytokinin dehydrogenase 5 [Jatropha curcas]
8 Hb_003636_010 0.1090486237 - - hypothetical protein CISIN_1g037850mg, partial [Citrus sinensis]
9 Hb_000676_030 0.110402422 - - PREDICTED: probable mitochondrial chaperone BCS1-B [Jatropha curcas]
10 Hb_005054_300 0.1186640452 - - aquaporin [Hevea brasiliensis]
11 Hb_106969_010 0.1205246238 - - Cytochrome P450 76C4 [Glycine soja]
12 Hb_002219_090 0.1230774982 - - protein kinase atmrk1, putative [Ricinus communis]
13 Hb_000333_130 0.1235572009 - - Protein kinase APK1B, chloroplast precursor, putative [Ricinus communis]
14 Hb_004931_050 0.1286062258 transcription factor TF Family: MYB-related Transcription repressor MYB4, putative [Ricinus communis]
15 Hb_001691_190 0.1298451052 - - conserved hypothetical protein [Ricinus communis]
16 Hb_000345_190 0.1363374976 transcription factor TF Family: C2H2 hypothetical protein POPTR_0005s02730g [Populus trichocarpa]
17 Hb_149056_010 0.1385869586 - - hypothetical protein CICLE_v10016664mg [Citrus clementina]
18 Hb_000512_080 0.1492733015 - - ankyrin repeat-containing protein, putative [Ricinus communis]
19 Hb_000532_060 0.1495093256 - - copper-transporting atpase p-type, putative [Ricinus communis]
20 Hb_000170_230 0.1506569153 - - PREDICTED: probable receptor-like protein kinase At1g11050 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_079955_010 Hb_079955_010 Hb_151281_010 Hb_151281_010 Hb_079955_010--Hb_151281_010 Hb_003090_060 Hb_003090_060 Hb_079955_010--Hb_003090_060 Hb_002621_030 Hb_002621_030 Hb_079955_010--Hb_002621_030 Hb_131591_010 Hb_131591_010 Hb_079955_010--Hb_131591_010 Hb_011791_010 Hb_011791_010 Hb_079955_010--Hb_011791_010 Hb_111985_060 Hb_111985_060 Hb_079955_010--Hb_111985_060 Hb_151281_010--Hb_131591_010 Hb_151281_010--Hb_002621_030 Hb_151281_010--Hb_003090_060 Hb_000676_030 Hb_000676_030 Hb_151281_010--Hb_000676_030 Hb_151281_010--Hb_011791_010 Hb_003090_060--Hb_111985_060 Hb_003090_060--Hb_002621_030 Hb_005054_300 Hb_005054_300 Hb_003090_060--Hb_005054_300 Hb_004931_050 Hb_004931_050 Hb_003090_060--Hb_004931_050 Hb_002621_030--Hb_131591_010 Hb_002621_030--Hb_000676_030 Hb_002621_030--Hb_111985_060 Hb_001691_190 Hb_001691_190 Hb_131591_010--Hb_001691_190 Hb_131591_010--Hb_000676_030 Hb_131591_010--Hb_003090_060 Hb_011791_010--Hb_000676_030 Hb_002219_090 Hb_002219_090 Hb_011791_010--Hb_002219_090 Hb_001073_060 Hb_001073_060 Hb_011791_010--Hb_001073_060 Hb_000333_130 Hb_000333_130 Hb_011791_010--Hb_000333_130 Hb_106969_010 Hb_106969_010 Hb_011791_010--Hb_106969_010 Hb_111985_060--Hb_005054_300 Hb_011054_030 Hb_011054_030 Hb_111985_060--Hb_011054_030 Hb_021596_070 Hb_021596_070 Hb_111985_060--Hb_021596_070 Hb_008667_020 Hb_008667_020 Hb_111985_060--Hb_008667_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 33.8348 3.48005 4.30274 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 13.0072 0.175697

CAGE analysis