Hb_079978_010

Information

Type -
Description -
Location Contig79978: 975-1350
Sequence    

Annotation

kegg
ID vvi:100263690
description peptidyl-prolyl cis-trans isomerase CYP71
nr
ID XP_010244082.1
description PREDICTED: peptidyl-prolyl cis-trans isomerase CYP71 isoform X1 [Nelumbo nucifera]
swissprot
ID Q8W4D0
description Peptidyl-prolyl cis-trans isomerase CYP71 OS=Arabidopsis thaliana GN=CYP71 PE=1 SV=1
trembl
ID F6GW33
description Putative uncharacterized protein OS=Vitis vinifera GN=VIT_06s0061g01590 PE=4 SV=1
Gene Ontology
ID GO:0005634
description peptidyl-prolyl cis-trans isomerase cyp71 isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_079978_010 0.0 - - PREDICTED: peptidyl-prolyl cis-trans isomerase CYP71 isoform X1 [Nelumbo nucifera]
2 Hb_005318_020 0.1265110485 - - PREDICTED: lecithin-cholesterol acyltransferase-like 4 isoform X3 [Jatropha curcas]
3 Hb_007083_050 0.1313016216 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 12-like isoform X2 [Nelumbo nucifera]
4 Hb_122567_020 0.1677401923 - - hypothetical protein CICLE_v10009900mg [Citrus clementina]
5 Hb_101151_030 0.1713519793 - - -
6 Hb_000805_300 0.1773622767 - - -
7 Hb_007447_020 0.1833666544 - - hypothetical protein CISIN_1g038065mg [Citrus sinensis]
8 Hb_001385_080 0.1898489953 - - -
9 Hb_007188_050 0.190501523 - - -
10 Hb_003623_020 0.1934994735 - - -
11 Hb_002204_040 0.1935943516 - - hypothetical protein B456_008G181200 [Gossypium raimondii]
12 Hb_008096_020 0.2071644093 - - -
13 Hb_000084_130 0.2072457093 - - -
14 Hb_000248_030 0.207293143 - - hypothetical protein Pmar_PMAR005331 [Perkinsus marinus ATCC 50983]
15 Hb_169170_010 0.2081689146 - - PREDICTED: protein disulfide-isomerase 5-1 isoform X2 [Nelumbo nucifera]
16 Hb_005933_010 0.208835487 - - PREDICTED: putative disease resistance RPP13-like protein 1 [Populus euphratica]
17 Hb_005839_010 0.2125740937 - - 30S ribosomal protein s13 [Camellia sinensis]
18 Hb_001454_110 0.2156410219 - - hypothetical protein POPTR_0026s00250g [Populus trichocarpa]
19 Hb_103093_010 0.2187774338 - - PREDICTED: wall-associated receptor kinase 4-like [Elaeis guineensis]
20 Hb_000291_130 0.2206960052 - - -

Gene co-expression network

sample Hb_079978_010 Hb_079978_010 Hb_005318_020 Hb_005318_020 Hb_079978_010--Hb_005318_020 Hb_007083_050 Hb_007083_050 Hb_079978_010--Hb_007083_050 Hb_122567_020 Hb_122567_020 Hb_079978_010--Hb_122567_020 Hb_101151_030 Hb_101151_030 Hb_079978_010--Hb_101151_030 Hb_000805_300 Hb_000805_300 Hb_079978_010--Hb_000805_300 Hb_007447_020 Hb_007447_020 Hb_079978_010--Hb_007447_020 Hb_005318_020--Hb_007083_050 Hb_005318_020--Hb_007447_020 Hb_000683_090 Hb_000683_090 Hb_005318_020--Hb_000683_090 Hb_169170_010 Hb_169170_010 Hb_005318_020--Hb_169170_010 Hb_000084_130 Hb_000084_130 Hb_005318_020--Hb_000084_130 Hb_007083_050--Hb_169170_010 Hb_177103_010 Hb_177103_010 Hb_007083_050--Hb_177103_010 Hb_007083_050--Hb_000084_130 Hb_007083_050--Hb_122567_020 Hb_005933_010 Hb_005933_010 Hb_122567_020--Hb_005933_010 Hb_122567_020--Hb_000805_300 Hb_000617_170 Hb_000617_170 Hb_122567_020--Hb_000617_170 Hb_059952_010 Hb_059952_010 Hb_122567_020--Hb_059952_010 Hb_001385_080 Hb_001385_080 Hb_122567_020--Hb_001385_080 Hb_001235_060 Hb_001235_060 Hb_122567_020--Hb_001235_060 Hb_101151_030--Hb_000805_300 Hb_003623_020 Hb_003623_020 Hb_101151_030--Hb_003623_020 Hb_000002_030 Hb_000002_030 Hb_101151_030--Hb_000002_030 Hb_001454_110 Hb_001454_110 Hb_101151_030--Hb_001454_110 Hb_101151_030--Hb_001235_060 Hb_000805_300--Hb_001454_110 Hb_032531_040 Hb_032531_040 Hb_000805_300--Hb_032531_040 Hb_000805_300--Hb_005933_010 Hb_000805_300--Hb_059952_010 Hb_031866_050 Hb_031866_050 Hb_007447_020--Hb_031866_050 Hb_007447_020--Hb_000683_090 Hb_007447_020--Hb_169170_010 Hb_007447_020--Hb_122567_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.61702 2.18555 3.76654 91.6491 5.79123 468.812
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
7.69351 11.3562 16.7111 25.5966 19.1628

CAGE analysis