Hb_079993_010

Information

Type -
Description -
Location Contig79993: 14-551
Sequence    

Annotation

kegg
ID pmum:103336399
description uncharacterized LOC103336399
nr
ID XP_008237661.1
description PREDICTED: uncharacterized protein LOC103336399 [Prunus mume]
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_079993_010 0.0 - - PREDICTED: uncharacterized protein LOC103336399 [Prunus mume]
2 Hb_002291_040 0.2656241042 - - hypothetical protein VITISV_030841 [Vitis vinifera]
3 Hb_000926_350 0.293601961 transcription factor TF Family: SWI/SNF-BAF60b PREDICTED: upstream activation factor subunit UAF30 [Jatropha curcas]
4 Hb_145827_010 0.2973610183 - - hypothetical protein POPTR_0003s13630g [Populus trichocarpa]
5 Hb_000227_030 0.3076217763 - - -
6 Hb_153461_010 0.3127064361 - - PREDICTED: uncharacterized protein LOC105640954 [Jatropha curcas]
7 Hb_124141_010 0.3247238388 - - plant origin recognition complex subunit, putative [Ricinus communis]
8 Hb_039635_010 0.3254779205 - - hypothetical protein PRUPE_ppa021229mg [Prunus persica]
9 Hb_143800_010 0.3258632234 - - hypothetical protein POPTR_0010s21410g, partial [Populus trichocarpa]
10 Hb_120052_010 0.3295801967 - - hypothetical protein PRUPE_ppa1027171mg [Prunus persica]
11 Hb_054936_010 0.3330976353 - - PREDICTED: uncharacterized protein LOC105793230 [Gossypium raimondii]
12 Hb_000684_480 0.3355154053 transcription factor TF Family: Orphans -
13 Hb_021888_110 0.3381497756 - - -
14 Hb_006065_040 0.3387176186 - - -
15 Hb_144101_010 0.3468971062 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance RPP13-like protein 1 [Vitis vinifera]
16 Hb_012094_030 0.3486044924 - - PREDICTED: uncharacterized protein LOC103699727 [Phoenix dactylifera]
17 Hb_115045_010 0.3487899375 - - ATP binding protein, putative [Ricinus communis]
18 Hb_005601_050 0.3492574529 - - PREDICTED: uncharacterized protein LOC103444007 [Malus domestica]
19 Hb_047091_010 0.3536423311 - - GABA-specific permease, putative [Ricinus communis]
20 Hb_000204_020 0.355006118 transcription factor TF Family: GNAT PREDICTED: uncharacterized N-acetyltransferase ycf52 [Jatropha curcas]

Gene co-expression network

sample Hb_079993_010 Hb_079993_010 Hb_002291_040 Hb_002291_040 Hb_079993_010--Hb_002291_040 Hb_000926_350 Hb_000926_350 Hb_079993_010--Hb_000926_350 Hb_145827_010 Hb_145827_010 Hb_079993_010--Hb_145827_010 Hb_000227_030 Hb_000227_030 Hb_079993_010--Hb_000227_030 Hb_153461_010 Hb_153461_010 Hb_079993_010--Hb_153461_010 Hb_124141_010 Hb_124141_010 Hb_079993_010--Hb_124141_010 Hb_151939_010 Hb_151939_010 Hb_002291_040--Hb_151939_010 Hb_001385_080 Hb_001385_080 Hb_002291_040--Hb_001385_080 Hb_001300_050 Hb_001300_050 Hb_002291_040--Hb_001300_050 Hb_005928_070 Hb_005928_070 Hb_002291_040--Hb_005928_070 Hb_001231_070 Hb_001231_070 Hb_002291_040--Hb_001231_070 Hb_001907_090 Hb_001907_090 Hb_000926_350--Hb_001907_090 Hb_000684_480 Hb_000684_480 Hb_000926_350--Hb_000684_480 Hb_000066_180 Hb_000066_180 Hb_000926_350--Hb_000066_180 Hb_071079_050 Hb_071079_050 Hb_000926_350--Hb_071079_050 Hb_004958_040 Hb_004958_040 Hb_000926_350--Hb_004958_040 Hb_000926_350--Hb_001300_050 Hb_059952_010 Hb_059952_010 Hb_145827_010--Hb_059952_010 Hb_000316_090 Hb_000316_090 Hb_145827_010--Hb_000316_090 Hb_001579_040 Hb_001579_040 Hb_145827_010--Hb_001579_040 Hb_000002_030 Hb_000002_030 Hb_145827_010--Hb_000002_030 Hb_001454_110 Hb_001454_110 Hb_145827_010--Hb_001454_110 Hb_001981_080 Hb_001981_080 Hb_145827_010--Hb_001981_080 Hb_039635_010 Hb_039635_010 Hb_000227_030--Hb_039635_010 Hb_151978_010 Hb_151978_010 Hb_000227_030--Hb_151978_010 Hb_179763_020 Hb_179763_020 Hb_000227_030--Hb_179763_020 Hb_163413_010 Hb_163413_010 Hb_000227_030--Hb_163413_010 Hb_002641_110 Hb_002641_110 Hb_000227_030--Hb_002641_110 Hb_054936_010 Hb_054936_010 Hb_153461_010--Hb_054936_010 Hb_000903_030 Hb_000903_030 Hb_153461_010--Hb_000903_030 Hb_153461_010--Hb_124141_010 Hb_153461_010--Hb_000684_480 Hb_000086_190 Hb_000086_190 Hb_153461_010--Hb_000086_190 Hb_005731_140 Hb_005731_140 Hb_124141_010--Hb_005731_140 Hb_003029_100 Hb_003029_100 Hb_124141_010--Hb_003029_100 Hb_166480_010 Hb_166480_010 Hb_124141_010--Hb_166480_010 Hb_032531_060 Hb_032531_060 Hb_124141_010--Hb_032531_060 Hb_034579_010 Hb_034579_010 Hb_124141_010--Hb_034579_010 Hb_002482_060 Hb_002482_060 Hb_124141_010--Hb_002482_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0777946 0 0 0.0823158 0 0.29289
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.111664 0 0 0

CAGE analysis