Hb_080083_010

Information

Type -
Description -
Location Contig80083: 72-406
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_080083_010 0.0 - - -
2 Hb_005057_010 0.1812979544 - - -
3 Hb_000140_150 0.1899643937 - - -
4 Hb_000525_040 0.1916236602 - - -
5 Hb_027556_010 0.191745922 - - -
6 Hb_000088_060 0.2056354803 - - -
7 Hb_017417_010 0.2111978601 - - -
8 Hb_000109_150 0.2113568788 - - conserved hypothetical protein [Ricinus communis]
9 Hb_004092_010 0.219300016 - - transferase, transferring glycosyl groups, putative [Ricinus communis]
10 Hb_010368_070 0.2201870021 - - conserved hypothetical protein [Ricinus communis]
11 Hb_002701_130 0.2232172643 transcription factor TF Family: MYB Myb domain protein 121 [Theobroma cacao]
12 Hb_001158_030 0.2252359532 - - -
13 Hb_000751_090 0.2288872082 - - -
14 Hb_001773_020 0.2370124656 - - hypothetical protein POPTR_0016s00980g [Populus trichocarpa]
15 Hb_019936_010 0.2372180975 - - PREDICTED: 26S proteasome non-ATPase regulatory subunit 10 [Jatropha curcas]
16 Hb_008453_020 0.2400272262 - - PREDICTED: E3 ubiquitin-protein ligase ATL23 [Jatropha curcas]
17 Hb_011616_030 0.2403614391 - - -
18 Hb_003777_070 0.2408803134 - - -
19 Hb_000922_150 0.2409533462 - - -
20 Hb_006557_010 0.2420767899 - - -

Gene co-expression network

sample Hb_080083_010 Hb_080083_010 Hb_005057_010 Hb_005057_010 Hb_080083_010--Hb_005057_010 Hb_000140_150 Hb_000140_150 Hb_080083_010--Hb_000140_150 Hb_000525_040 Hb_000525_040 Hb_080083_010--Hb_000525_040 Hb_027556_010 Hb_027556_010 Hb_080083_010--Hb_027556_010 Hb_000088_060 Hb_000088_060 Hb_080083_010--Hb_000088_060 Hb_017417_010 Hb_017417_010 Hb_080083_010--Hb_017417_010 Hb_005057_010--Hb_027556_010 Hb_005057_010--Hb_000140_150 Hb_010368_070 Hb_010368_070 Hb_005057_010--Hb_010368_070 Hb_011716_040 Hb_011716_040 Hb_005057_010--Hb_011716_040 Hb_095397_010 Hb_095397_010 Hb_005057_010--Hb_095397_010 Hb_005057_010--Hb_000525_040 Hb_000140_150--Hb_027556_010 Hb_000140_150--Hb_011716_040 Hb_030414_050 Hb_030414_050 Hb_000140_150--Hb_030414_050 Hb_000140_150--Hb_010368_070 Hb_000926_270 Hb_000926_270 Hb_000140_150--Hb_000926_270 Hb_000525_040--Hb_010368_070 Hb_002903_120 Hb_002903_120 Hb_000525_040--Hb_002903_120 Hb_004032_460 Hb_004032_460 Hb_000525_040--Hb_004032_460 Hb_019936_010 Hb_019936_010 Hb_000525_040--Hb_019936_010 Hb_007634_020 Hb_007634_020 Hb_000525_040--Hb_007634_020 Hb_011616_030 Hb_011616_030 Hb_000525_040--Hb_011616_030 Hb_001158_030 Hb_001158_030 Hb_027556_010--Hb_001158_030 Hb_027556_010--Hb_011716_040 Hb_027556_010--Hb_000926_270 Hb_000958_010 Hb_000958_010 Hb_027556_010--Hb_000958_010 Hb_006557_010 Hb_006557_010 Hb_000088_060--Hb_006557_010 Hb_001195_590 Hb_001195_590 Hb_000088_060--Hb_001195_590 Hb_006735_040 Hb_006735_040 Hb_000088_060--Hb_006735_040 Hb_004092_010 Hb_004092_010 Hb_000088_060--Hb_004092_010 Hb_000088_060--Hb_005057_010 Hb_000668_010 Hb_000668_010 Hb_017417_010--Hb_000668_010 Hb_000922_150 Hb_000922_150 Hb_017417_010--Hb_000922_150 Hb_004048_140 Hb_004048_140 Hb_017417_010--Hb_004048_140 Hb_000183_070 Hb_000183_070 Hb_017417_010--Hb_000183_070 Hb_017417_010--Hb_019936_010 Hb_005714_040 Hb_005714_040 Hb_017417_010--Hb_005714_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
35.8212 5.31641 0 0 48.614 7.19103
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
10.5941 14.9269 1.80472 2.62399 0

CAGE analysis