Hb_080085_010

Information

Type -
Description -
Location Contig80085: 46-614
Sequence    

Annotation

kegg
ID cmo:103498182
description uncharacterized LOC103498182
nr
ID WP_042918419.1
description MULTISPECIES: hypothetical protein, partial [Pseudomonas fluorescens group]
swissprot
ID -
description -
trembl
ID C7J7N6
description Os10g0357350 protein OS=Oryza sativa subsp. japonica GN=Os10g0357350 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_080085_010 0.0 - - MULTISPECIES: hypothetical protein, partial [Pseudomonas fluorescens group]
2 Hb_033661_010 0.2285872134 - - PREDICTED: uncharacterized protein LOC105852393, partial [Cicer arietinum]
3 Hb_040290_010 0.2464519017 - - MULTISPECIES: hypothetical protein, partial [Pseudomonas fluorescens group]
4 Hb_103362_010 0.2795614543 - - PREDICTED: uncharacterized protein LOC105636491 [Jatropha curcas]
5 Hb_058722_010 0.282598773 - - -
6 Hb_001377_250 0.2833556091 - - dynamin, putative [Ricinus communis]
7 Hb_001277_230 0.2886388223 - - -
8 Hb_007276_020 0.3035194045 - - hypothetical protein PRUPE_ppa015000mg [Prunus persica]
9 Hb_006054_050 0.3037310673 - - PREDICTED: uncharacterized protein LOC105649250, partial [Jatropha curcas]
10 Hb_001366_160 0.306507071 - - -
11 Hb_000103_350 0.3206734607 - - -
12 Hb_002988_030 0.3234834046 - - hypothetical protein EUGRSUZ_K02073 [Eucalyptus grandis]
13 Hb_148392_010 0.324796179 - - PREDICTED: uncharacterized protein LOC105636491 [Jatropha curcas]
14 Hb_010407_190 0.3263195507 - - phosphate transporter [Manihot esculenta]
15 Hb_000331_650 0.3276005405 - - PREDICTED: peptide methionine sulfoxide reductase-like [Jatropha curcas]
16 Hb_000032_060 0.3294972193 - - conserved hypothetical protein [Ricinus communis]
17 Hb_068804_040 0.331455594 - - -
18 Hb_005194_030 0.3323884471 - - PREDICTED: putative formamidase C869.04 isoform X1 [Jatropha curcas]
19 Hb_003813_160 0.3340204363 - - -
20 Hb_001172_080 0.3345112239 - - PREDICTED: uncharacterized protein LOC105800880, partial [Gossypium raimondii]

Gene co-expression network

sample Hb_080085_010 Hb_080085_010 Hb_033661_010 Hb_033661_010 Hb_080085_010--Hb_033661_010 Hb_040290_010 Hb_040290_010 Hb_080085_010--Hb_040290_010 Hb_103362_010 Hb_103362_010 Hb_080085_010--Hb_103362_010 Hb_058722_010 Hb_058722_010 Hb_080085_010--Hb_058722_010 Hb_001377_250 Hb_001377_250 Hb_080085_010--Hb_001377_250 Hb_001277_230 Hb_001277_230 Hb_080085_010--Hb_001277_230 Hb_033661_010--Hb_001277_230 Hb_002304_020 Hb_002304_020 Hb_033661_010--Hb_002304_020 Hb_033661_010--Hb_103362_010 Hb_158560_010 Hb_158560_010 Hb_033661_010--Hb_158560_010 Hb_004785_080 Hb_004785_080 Hb_033661_010--Hb_004785_080 Hb_001172_080 Hb_001172_080 Hb_040290_010--Hb_001172_080 Hb_011639_150 Hb_011639_150 Hb_040290_010--Hb_011639_150 Hb_161709_010 Hb_161709_010 Hb_040290_010--Hb_161709_010 Hb_001235_100 Hb_001235_100 Hb_040290_010--Hb_001235_100 Hb_093245_010 Hb_093245_010 Hb_040290_010--Hb_093245_010 Hb_000656_060 Hb_000656_060 Hb_103362_010--Hb_000656_060 Hb_001726_050 Hb_001726_050 Hb_103362_010--Hb_001726_050 Hb_000110_270 Hb_000110_270 Hb_103362_010--Hb_000110_270 Hb_000329_750 Hb_000329_750 Hb_103362_010--Hb_000329_750 Hb_011021_050 Hb_011021_050 Hb_103362_010--Hb_011021_050 Hb_000672_040 Hb_000672_040 Hb_103362_010--Hb_000672_040 Hb_068804_040 Hb_068804_040 Hb_058722_010--Hb_068804_040 Hb_011249_050 Hb_011249_050 Hb_058722_010--Hb_011249_050 Hb_000103_350 Hb_000103_350 Hb_058722_010--Hb_000103_350 Hb_003813_160 Hb_003813_160 Hb_058722_010--Hb_003813_160 Hb_057098_010 Hb_057098_010 Hb_058722_010--Hb_057098_010 Hb_002233_020 Hb_002233_020 Hb_001377_250--Hb_002233_020 Hb_042175_010 Hb_042175_010 Hb_001377_250--Hb_042175_010 Hb_027337_090 Hb_027337_090 Hb_001377_250--Hb_027337_090 Hb_000866_370 Hb_000866_370 Hb_001377_250--Hb_000866_370 Hb_004631_130 Hb_004631_130 Hb_001377_250--Hb_004631_130 Hb_003398_070 Hb_003398_070 Hb_001377_250--Hb_003398_070 Hb_002248_030 Hb_002248_030 Hb_001277_230--Hb_002248_030 Hb_000032_060 Hb_000032_060 Hb_001277_230--Hb_000032_060 Hb_005928_040 Hb_005928_040 Hb_001277_230--Hb_005928_040 Hb_027472_140 Hb_027472_140 Hb_001277_230--Hb_027472_140 Hb_177132_010 Hb_177132_010 Hb_001277_230--Hb_177132_010 Hb_001277_230--Hb_158560_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.168236 0.616738 0 0 0.218572 0.204435
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.131196 0.309216 0 0.0855879 0.57984

CAGE analysis