Hb_080147_020

Information

Type -
Description -
Location Contig80147: 8893-16513
Sequence    

Annotation

kegg
ID rcu:RCOM_1052220
description 3-hydroxyacyl-CoA dehyrogenase, putative (EC:5.1.2.3)
nr
ID XP_002514279.1
description 3-hydroxyacyl-CoA dehyrogenase, putative [Ricinus communis]
swissprot
ID Q9ZPI6
description Peroxisomal fatty acid beta-oxidation multifunctional protein AIM1 OS=Arabidopsis thaliana GN=AIM1 PE=1 SV=1
trembl
ID B9RKN5
description 3-hydroxyacyl-CoA dehyrogenase, putative OS=Ricinus communis GN=RCOM_1052220 PE=3 SV=1
Gene Ontology
ID GO:0005618
description peroxisomal fatty acid beta-oxidation multifunctional protein aim1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_58797: 8923-16505 , PASA_asmbl_58798: 11230-11606
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_080147_020 0.0 - - 3-hydroxyacyl-CoA dehyrogenase, putative [Ricinus communis]
2 Hb_000567_090 0.0773515939 - - PREDICTED: ketol-acid reductoisomerase, chloroplastic-like [Jatropha curcas]
3 Hb_002411_160 0.0990917463 - - PREDICTED: uncharacterized protein LOC105631262 isoform X1 [Jatropha curcas]
4 Hb_086639_050 0.1021346114 - - PREDICTED: uncharacterized protein At1g04910 isoform X1 [Jatropha curcas]
5 Hb_000098_150 0.1155119367 - - DNA helicase hus2, putative [Ricinus communis]
6 Hb_001221_580 0.1192933776 - - PREDICTED: recQ-mediated genome instability protein 1 [Jatropha curcas]
7 Hb_004108_210 0.1201610599 - - phenazine biosynthesis protein, putative [Ricinus communis]
8 Hb_004837_220 0.122526418 - - PREDICTED: sulfite reductase [ferredoxin], chloroplastic [Jatropha curcas]
9 Hb_002249_170 0.1227791728 - - copine, putative [Ricinus communis]
10 Hb_000098_180 0.1240775604 - - PREDICTED: uncharacterized protein LOC105633342 isoform X2 [Jatropha curcas]
11 Hb_004361_060 0.1242205675 - - PREDICTED: uncharacterized protein LOC105636705 [Jatropha curcas]
12 Hb_005504_030 0.1292632054 - - PREDICTED: somatic embryogenesis receptor kinase 2-like [Pyrus x bretschneideri]
13 Hb_052135_020 0.1300472059 - - PREDICTED: MAP kinase kinase MKK1/SSP32-like [Jatropha curcas]
14 Hb_001318_150 0.1307036333 - - PREDICTED: shaggy-related protein kinase alpha-like [Jatropha curcas]
15 Hb_004577_010 0.1321413965 - - PREDICTED: transmembrane protein 45A [Prunus mume]
16 Hb_001247_210 0.1329015347 - - conserved hypothetical protein [Ricinus communis]
17 Hb_001117_080 0.133268063 - - PREDICTED: mitogen-activated protein kinase kinase 2 isoform X1 [Jatropha curcas]
18 Hb_000161_240 0.1353394108 - - PREDICTED: ion channel DMI1-like isoform X1 [Jatropha curcas]
19 Hb_002686_150 0.1364027634 - - Glucan endo-1,3-beta-glucosidase precursor, putative [Ricinus communis]
20 Hb_000529_040 0.137908756 - - PREDICTED: uncharacterized protein LOC105641671 [Jatropha curcas]

Gene co-expression network

sample Hb_080147_020 Hb_080147_020 Hb_000567_090 Hb_000567_090 Hb_080147_020--Hb_000567_090 Hb_002411_160 Hb_002411_160 Hb_080147_020--Hb_002411_160 Hb_086639_050 Hb_086639_050 Hb_080147_020--Hb_086639_050 Hb_000098_150 Hb_000098_150 Hb_080147_020--Hb_000098_150 Hb_001221_580 Hb_001221_580 Hb_080147_020--Hb_001221_580 Hb_004108_210 Hb_004108_210 Hb_080147_020--Hb_004108_210 Hb_052135_020 Hb_052135_020 Hb_000567_090--Hb_052135_020 Hb_000567_090--Hb_086639_050 Hb_000567_090--Hb_001221_580 Hb_000098_180 Hb_000098_180 Hb_000567_090--Hb_000098_180 Hb_001117_080 Hb_001117_080 Hb_000567_090--Hb_001117_080 Hb_002411_160--Hb_086639_050 Hb_001001_090 Hb_001001_090 Hb_002411_160--Hb_001001_090 Hb_000649_330 Hb_000649_330 Hb_002411_160--Hb_000649_330 Hb_114943_020 Hb_114943_020 Hb_002411_160--Hb_114943_020 Hb_002411_160--Hb_000098_180 Hb_086639_050--Hb_001117_080 Hb_002249_170 Hb_002249_170 Hb_086639_050--Hb_002249_170 Hb_000111_390 Hb_000111_390 Hb_086639_050--Hb_000111_390 Hb_000098_150--Hb_004108_210 Hb_001863_160 Hb_001863_160 Hb_000098_150--Hb_001863_160 Hb_005144_210 Hb_005144_210 Hb_000098_150--Hb_005144_210 Hb_000098_150--Hb_001221_580 Hb_004712_190 Hb_004712_190 Hb_000098_150--Hb_004712_190 Hb_014231_020 Hb_014231_020 Hb_000098_150--Hb_014231_020 Hb_001221_580--Hb_004108_210 Hb_000890_160 Hb_000890_160 Hb_001221_580--Hb_000890_160 Hb_003428_090 Hb_003428_090 Hb_001221_580--Hb_003428_090 Hb_005903_020 Hb_005903_020 Hb_001221_580--Hb_005903_020 Hb_004108_210--Hb_005144_210 Hb_000296_010 Hb_000296_010 Hb_004108_210--Hb_000296_010 Hb_004108_210--Hb_005903_020 Hb_004108_210--Hb_004712_190
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.68235 17.2696 32.3051 16.0378 2.19203 4.93326
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.19882 3.26689 2.12029 16.6626 9.02605

CAGE analysis