Hb_080147_030

Information

Type transcription factor
Description TF Family: CPP
Location Contig80147: 18092-23572
Sequence    

Annotation

kegg
ID rcu:RCOM_1052210
description transcription factor, putative
nr
ID XP_012076724.1
description PREDICTED: protein tesmin/TSO1-like CXC 5 isoform X3 [Jatropha curcas]
swissprot
ID Q9SZD1
description Protein tesmin/TSO1-like CXC 5 OS=Arabidopsis thaliana GN=TCX5 PE=1 SV=1
trembl
ID A0A067KPI7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07265 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_58801: 17627-23612 , PASA_asmbl_58802: 23709-23889
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_080147_030 0.0 transcription factor TF Family: CPP PREDICTED: protein tesmin/TSO1-like CXC 5 isoform X3 [Jatropha curcas]
2 Hb_000487_100 0.0896537287 - - PREDICTED: protein unc-45 homolog A [Jatropha curcas]
3 Hb_003656_160 0.0909312553 transcription factor TF Family: Alfin-like hypothetical protein B456_013G226400 [Gossypium raimondii]
4 Hb_010222_080 0.0914374913 - - PREDICTED: pentatricopeptide repeat-containing protein At2g06000 [Jatropha curcas]
5 Hb_004678_020 0.0944256213 - - PREDICTED: protein YIF1B [Jatropha curcas]
6 Hb_001975_020 0.0974432652 - - PREDICTED: uncharacterized protein LOC105637186 [Jatropha curcas]
7 Hb_000740_070 0.0996053076 - - -
8 Hb_022408_010 0.1021717108 - - PREDICTED: protein SUPPRESSOR OF GENE SILENCING 3 [Jatropha curcas]
9 Hb_007885_070 0.1028165699 - - cleavage and polyadenylation specificity factor, putative [Ricinus communis]
10 Hb_001616_050 0.1031671338 - - PREDICTED: uncharacterized protein LOC105644363 [Jatropha curcas]
11 Hb_002942_220 0.1041147861 - - PREDICTED: uncharacterized protein LOC105648740 [Jatropha curcas]
12 Hb_005725_020 0.105323835 transcription factor TF Family: bZIP PREDICTED: ABSCISIC ACID-INSENSITIVE 5-like protein 2 [Jatropha curcas]
13 Hb_033594_020 0.1068038457 - - PREDICTED: ruvB-like 2 [Jatropha curcas]
14 Hb_004128_080 0.1070750595 transcription factor TF Family: Orphans PREDICTED: two-component response regulator-like APRR7 [Jatropha curcas]
15 Hb_002221_050 0.1080682042 - - PREDICTED: peptidyl-prolyl cis-trans isomerase CYP65 isoform X1 [Jatropha curcas]
16 Hb_000107_530 0.1084798434 - - calcium-dependent protein kinase, putative [Ricinus communis]
17 Hb_000320_380 0.1088777553 - - PREDICTED: uncharacterized protein LOC105649330 isoform X2 [Jatropha curcas]
18 Hb_001771_120 0.1101826347 - - K+ transport growth defect-like protein [Hevea brasiliensis]
19 Hb_000116_280 0.1110032509 - - PREDICTED: epidermal growth factor receptor substrate 15-like 1 [Jatropha curcas]
20 Hb_033834_010 0.1110179533 - - PREDICTED: leucine--tRNA ligase, cytoplasmic [Jatropha curcas]

Gene co-expression network

sample Hb_080147_030 Hb_080147_030 Hb_000487_100 Hb_000487_100 Hb_080147_030--Hb_000487_100 Hb_003656_160 Hb_003656_160 Hb_080147_030--Hb_003656_160 Hb_010222_080 Hb_010222_080 Hb_080147_030--Hb_010222_080 Hb_004678_020 Hb_004678_020 Hb_080147_030--Hb_004678_020 Hb_001975_020 Hb_001975_020 Hb_080147_030--Hb_001975_020 Hb_000740_070 Hb_000740_070 Hb_080147_030--Hb_000740_070 Hb_003125_060 Hb_003125_060 Hb_000487_100--Hb_003125_060 Hb_000685_080 Hb_000685_080 Hb_000487_100--Hb_000685_080 Hb_005725_020 Hb_005725_020 Hb_000487_100--Hb_005725_020 Hb_000487_100--Hb_000740_070 Hb_005399_020 Hb_005399_020 Hb_000487_100--Hb_005399_020 Hb_004678_060 Hb_004678_060 Hb_003656_160--Hb_004678_060 Hb_002301_220 Hb_002301_220 Hb_003656_160--Hb_002301_220 Hb_000343_210 Hb_000343_210 Hb_003656_160--Hb_000343_210 Hb_046615_020 Hb_046615_020 Hb_003656_160--Hb_046615_020 Hb_002007_350 Hb_002007_350 Hb_003656_160--Hb_002007_350 Hb_002400_180 Hb_002400_180 Hb_003656_160--Hb_002400_180 Hb_001584_290 Hb_001584_290 Hb_010222_080--Hb_001584_290 Hb_002942_220 Hb_002942_220 Hb_010222_080--Hb_002942_220 Hb_017168_010 Hb_017168_010 Hb_010222_080--Hb_017168_010 Hb_000139_250 Hb_000139_250 Hb_010222_080--Hb_000139_250 Hb_010222_080--Hb_004678_020 Hb_004162_280 Hb_004162_280 Hb_010222_080--Hb_004162_280 Hb_005701_040 Hb_005701_040 Hb_004678_020--Hb_005701_040 Hb_000001_180 Hb_000001_180 Hb_004678_020--Hb_000001_180 Hb_003384_030 Hb_003384_030 Hb_004678_020--Hb_003384_030 Hb_023001_020 Hb_023001_020 Hb_004678_020--Hb_023001_020 Hb_004678_020--Hb_002942_220 Hb_000327_310 Hb_000327_310 Hb_001975_020--Hb_000327_310 Hb_001975_020--Hb_046615_020 Hb_031754_010 Hb_031754_010 Hb_001975_020--Hb_031754_010 Hb_005295_040 Hb_005295_040 Hb_001975_020--Hb_005295_040 Hb_000116_280 Hb_000116_280 Hb_001975_020--Hb_000116_280 Hb_003018_160 Hb_003018_160 Hb_001975_020--Hb_003018_160 Hb_001474_030 Hb_001474_030 Hb_000740_070--Hb_001474_030 Hb_000740_070--Hb_003656_160 Hb_000740_070--Hb_005701_040 Hb_001504_150 Hb_001504_150 Hb_000740_070--Hb_001504_150 Hb_000740_070--Hb_004678_020 Hb_007164_020 Hb_007164_020 Hb_000740_070--Hb_007164_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
9.29312 5.78087 2.89183 2.33556 10.8496 7.72655
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.34229 2.25399 5.79308 1.40534 1.93169

CAGE analysis