Hb_080147_060

Information

Type -
Description -
Location Contig80147: 41768-43975
Sequence    

Annotation

kegg
ID rcu:RCOM_1052180
description cak1, putative (EC:2.7.11.22 2.7.11.14)
nr
ID XP_012076728.1
description PREDICTED: cyclin-dependent kinase F-1 isoform X1 [Jatropha curcas]
swissprot
ID O80345
description Cyclin-dependent kinase F-1 OS=Arabidopsis thaliana GN=CDKF-1 PE=1 SV=1
trembl
ID A0A067KC27
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07268 PE=4 SV=1
Gene Ontology
ID GO:0005634
description cyclin-dependent kinase f-1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_58813: 41672-44020
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_080147_060 0.0 - - PREDICTED: cyclin-dependent kinase F-1 isoform X1 [Jatropha curcas]
2 Hb_002597_010 0.1289174319 - - PREDICTED: putative disease resistance protein RGA1 [Malus domestica]
3 Hb_000003_510 0.153527204 - - PREDICTED: uncharacterized protein LOC105631555 [Jatropha curcas]
4 Hb_000041_290 0.1598651913 - - Aspartic proteinase nepenthesin-1 precursor, putative [Ricinus communis]
5 Hb_002016_020 0.1605113997 - - RALFL33, putative [Ricinus communis]
6 Hb_000580_070 0.1632448056 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At5g10290 [Jatropha curcas]
7 Hb_001959_030 0.1659500391 - - conserved hypothetical protein [Ricinus communis]
8 Hb_001474_010 0.1671966123 - - PREDICTED: synaptotagmin-3 isoform X1 [Jatropha curcas]
9 Hb_000915_070 0.171831736 - - ATP binding protein, putative [Ricinus communis]
10 Hb_001369_620 0.1735602185 - - PREDICTED: protein EXORDIUM-like 3 [Jatropha curcas]
11 Hb_000032_560 0.1747587629 - - hypothetical protein JCGZ_15037 [Jatropha curcas]
12 Hb_029977_010 0.1786384487 - - catalytic, putative [Ricinus communis]
13 Hb_000589_210 0.1801692644 - - PREDICTED: uncharacterized protein LOC105647439 [Jatropha curcas]
14 Hb_000005_230 0.1811052241 - - hypothetical protein POPTR_0009s01160g [Populus trichocarpa]
15 Hb_002072_020 0.1848314158 - - hypothetical protein JCGZ_16057 [Jatropha curcas]
16 Hb_031042_030 0.1871276847 - - PREDICTED: WAT1-related protein At5g47470-like isoform X1 [Jatropha curcas]
17 Hb_001493_020 0.188941071 - - leucine-rich repeat receptor-like protein kinase [Manihot esculenta]
18 Hb_011214_120 0.1913167738 - - PREDICTED: uncharacterized protein LOC105636139 [Jatropha curcas]
19 Hb_014834_020 0.1931960612 - - PREDICTED: WAT1-related protein At5g47470-like isoform X1 [Jatropha curcas]
20 Hb_018133_110 0.1970822248 - - BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative [Ricinus communis]

Gene co-expression network

sample Hb_080147_060 Hb_080147_060 Hb_002597_010 Hb_002597_010 Hb_080147_060--Hb_002597_010 Hb_000003_510 Hb_000003_510 Hb_080147_060--Hb_000003_510 Hb_000041_290 Hb_000041_290 Hb_080147_060--Hb_000041_290 Hb_002016_020 Hb_002016_020 Hb_080147_060--Hb_002016_020 Hb_000580_070 Hb_000580_070 Hb_080147_060--Hb_000580_070 Hb_001959_030 Hb_001959_030 Hb_080147_060--Hb_001959_030 Hb_000032_560 Hb_000032_560 Hb_002597_010--Hb_000032_560 Hb_000005_230 Hb_000005_230 Hb_002597_010--Hb_000005_230 Hb_002597_010--Hb_002016_020 Hb_000347_230 Hb_000347_230 Hb_002597_010--Hb_000347_230 Hb_018133_110 Hb_018133_110 Hb_002597_010--Hb_018133_110 Hb_001963_020 Hb_001963_020 Hb_000003_510--Hb_001963_020 Hb_001369_620 Hb_001369_620 Hb_000003_510--Hb_001369_620 Hb_000276_030 Hb_000276_030 Hb_000003_510--Hb_000276_030 Hb_001470_040 Hb_001470_040 Hb_000003_510--Hb_001470_040 Hb_002072_020 Hb_002072_020 Hb_000003_510--Hb_002072_020 Hb_010174_170 Hb_010174_170 Hb_000003_510--Hb_010174_170 Hb_000041_290--Hb_001369_620 Hb_000041_290--Hb_002597_010 Hb_000041_290--Hb_001959_030 Hb_001021_030 Hb_001021_030 Hb_000041_290--Hb_001021_030 Hb_000041_290--Hb_002016_020 Hb_002016_020--Hb_001369_620 Hb_135811_040 Hb_135811_040 Hb_002016_020--Hb_135811_040 Hb_002016_020--Hb_000032_560 Hb_002016_020--Hb_001959_030 Hb_002016_020--Hb_000580_070 Hb_000580_070--Hb_000032_560 Hb_000580_070--Hb_018133_110 Hb_002749_070 Hb_002749_070 Hb_000580_070--Hb_002749_070 Hb_000487_240 Hb_000487_240 Hb_000580_070--Hb_000487_240 Hb_000025_740 Hb_000025_740 Hb_000580_070--Hb_000025_740 Hb_032050_050 Hb_032050_050 Hb_000580_070--Hb_032050_050 Hb_002042_200 Hb_002042_200 Hb_001959_030--Hb_002042_200 Hb_025254_020 Hb_025254_020 Hb_001959_030--Hb_025254_020 Hb_001959_030--Hb_018133_110 Hb_001959_030--Hb_001369_620 Hb_000175_480 Hb_000175_480 Hb_001959_030--Hb_000175_480
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.378967 1.963 2.28974 4.2589 0.15516 1.18565
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.199887 0.247127 0.0423299 12.2999 0.754352

CAGE analysis