Hb_080147_080

Information

Type -
Description -
Location Contig80147: 50412-51871
Sequence    

Annotation

kegg
ID rcu:RCOM_1052060
description peroxiredoxin, putative (EC:1.11.1.15)
nr
ID XP_002514273.1
description peroxiredoxin, putative [Ricinus communis]
swissprot
ID Q9XEX2
description Peroxiredoxin-2B OS=Arabidopsis thaliana GN=PRXIIB PE=1 SV=1
trembl
ID B9RKM9
description Peroxiredoxin, putative OS=Ricinus communis GN=RCOM_1052060 PE=4 SV=1
Gene Ontology
ID GO:0004601
description peroxiredoxin family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_58816: 50263-51940
cDNA
(Sanger)
(ID:Location)		 004_N24.ab1: 50332-51938 , 007_M09.ab1: 50339-51938 , 010_N20.ab1: 50379-51938 , 013_I08.ab1: 50380-51938 , 018_B23.ab1: 50410-51938 , 040_O06.ab1: 50336-51943 , 048_C03.ab1: 50336-51940

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_080147_080 0.0 - - peroxiredoxin, putative [Ricinus communis]
2 Hb_006420_020 0.1485442128 - - PREDICTED: UPF0392 protein RCOM_0530710 [Jatropha curcas]
3 Hb_075449_020 0.1490750504 - - PREDICTED: uncharacterized protein LOC105633096 [Jatropha curcas]
4 Hb_128376_010 0.1498047479 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
5 Hb_000390_220 0.1503564744 - - PREDICTED: uncharacterized protein LOC100244219 [Vitis vinifera]
6 Hb_000878_100 0.1549721032 - - PREDICTED: ABC transporter G family member 22 [Jatropha curcas]
7 Hb_002742_080 0.1550864558 - - unknown [Populus trichocarpa]
8 Hb_025306_010 0.1605807873 transcription factor TF Family: MYB-related syringolide-induced protein 1-3-1B [Populus trichocarpa]
9 Hb_001195_150 0.1651669217 transcription factor TF Family: MYB-related myb family transcription factor family protein [Populus trichocarpa]
10 Hb_001662_030 0.1686301706 - - PREDICTED: F-box protein SKIP23-like [Populus euphratica]
11 Hb_000152_670 0.1691272968 - - hypothetical protein VITISV_037603 [Vitis vinifera]
12 Hb_011909_060 0.1692866625 - - PREDICTED: zinc finger protein CONSTANS-LIKE 1 [Jatropha curcas]
13 Hb_178127_010 0.1693783587 - - Ubiquitin ligase SINAT3, putative [Ricinus communis]
14 Hb_002928_160 0.1694914069 - - PREDICTED: U-box domain-containing protein 15 [Jatropha curcas]
15 Hb_002316_050 0.1712778616 - - conserved hypothetical protein [Ricinus communis]
16 Hb_001052_040 0.1721938674 - - Ferredoxin-3, chloroplast precursor, putative [Ricinus communis]
17 Hb_011465_030 0.1732153626 - - PREDICTED: B2 protein [Jatropha curcas]
18 Hb_000540_120 0.1762664399 - - PREDICTED: probable serine/threonine-protein kinase RLCKVII [Jatropha curcas]
19 Hb_005333_030 0.1766212171 - - hypothetical protein JCGZ_15866 [Jatropha curcas]
20 Hb_001307_010 0.176879269 - - PREDICTED: uncharacterized protein LOC103939917 [Pyrus x bretschneideri]

Gene co-expression network

sample Hb_080147_080 Hb_080147_080 Hb_006420_020 Hb_006420_020 Hb_080147_080--Hb_006420_020 Hb_075449_020 Hb_075449_020 Hb_080147_080--Hb_075449_020 Hb_128376_010 Hb_128376_010 Hb_080147_080--Hb_128376_010 Hb_000390_220 Hb_000390_220 Hb_080147_080--Hb_000390_220 Hb_000878_100 Hb_000878_100 Hb_080147_080--Hb_000878_100 Hb_002742_080 Hb_002742_080 Hb_080147_080--Hb_002742_080 Hb_000571_150 Hb_000571_150 Hb_006420_020--Hb_000571_150 Hb_006420_020--Hb_000878_100 Hb_003125_030 Hb_003125_030 Hb_006420_020--Hb_003125_030 Hb_010831_020 Hb_010831_020 Hb_006420_020--Hb_010831_020 Hb_006745_010 Hb_006745_010 Hb_006420_020--Hb_006745_010 Hb_001662_030 Hb_001662_030 Hb_075449_020--Hb_001662_030 Hb_075449_020--Hb_000390_220 Hb_025306_010 Hb_025306_010 Hb_075449_020--Hb_025306_010 Hb_000540_120 Hb_000540_120 Hb_075449_020--Hb_000540_120 Hb_011465_030 Hb_011465_030 Hb_075449_020--Hb_011465_030 Hb_001999_250 Hb_001999_250 Hb_075449_020--Hb_001999_250 Hb_000152_670 Hb_000152_670 Hb_128376_010--Hb_000152_670 Hb_004017_040 Hb_004017_040 Hb_128376_010--Hb_004017_040 Hb_001052_040 Hb_001052_040 Hb_128376_010--Hb_001052_040 Hb_000261_290 Hb_000261_290 Hb_128376_010--Hb_000261_290 Hb_128376_010--Hb_002742_080 Hb_010883_080 Hb_010883_080 Hb_128376_010--Hb_010883_080 Hb_000390_220--Hb_001662_030 Hb_001189_130 Hb_001189_130 Hb_000390_220--Hb_001189_130 Hb_000390_220--Hb_025306_010 Hb_001307_010 Hb_001307_010 Hb_000390_220--Hb_001307_010 Hb_000953_030 Hb_000953_030 Hb_000390_220--Hb_000953_030 Hb_000768_010 Hb_000768_010 Hb_000878_100--Hb_000768_010 Hb_000878_100--Hb_011465_030 Hb_000265_250 Hb_000265_250 Hb_000878_100--Hb_000265_250 Hb_040600_010 Hb_040600_010 Hb_000878_100--Hb_040600_010 Hb_002742_080--Hb_001052_040 Hb_005333_030 Hb_005333_030 Hb_002742_080--Hb_005333_030 Hb_003710_040 Hb_003710_040 Hb_002742_080--Hb_003710_040 Hb_002742_080--Hb_000261_290 Hb_002320_070 Hb_002320_070 Hb_002742_080--Hb_002320_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2474.15 3681.06 1206.62 1079.39 1810.53 2341.09
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
513.777 288.189 207.088 149.003 222.742

CAGE analysis