Hb_080225_010

Information

Type -
Description -
Location Contig80225: 43-660
Sequence    

Annotation

kegg
ID rcu:RCOM_1078710
description kinase, putative
nr
ID XP_012085904.1
description PREDICTED: wall-associated receptor kinase-like 22 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID B9RM91
description Kinase, putative OS=Ricinus communis GN=RCOM_1078710 PE=3 SV=1
Gene Ontology
ID GO:0000166
description wall-associated receptor kinase-like 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_58868: 1-401
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_080225_010 0.0 - - PREDICTED: wall-associated receptor kinase-like 22 [Jatropha curcas]
2 Hb_000256_100 0.1265851515 transcription factor TF Family: ERF PPLZ02 family protein [Populus trichocarpa]
3 Hb_003057_080 0.1344494749 transcription factor TF Family: LOB PREDICTED: LOB domain-containing protein 1-like [Jatropha curcas]
4 Hb_000347_550 0.1508268345 transcription factor TF Family: MYB Duplicated homeodomain-like superfamily protein, putative [Theobroma cacao]
5 Hb_000614_180 0.155108325 - - -
6 Hb_000086_730 0.161883259 - - PREDICTED: feruloyl CoA ortho-hydroxylase 1-like [Jatropha curcas]
7 Hb_005000_040 0.1631342889 - - ACC oxidase ACCO2 [Manihot esculenta]
8 Hb_148435_010 0.1642595878 - - glutathione s-transferase, putative [Ricinus communis]
9 Hb_000347_530 0.1661258222 transcription factor TF Family: MYB PREDICTED: transcription factor MYB114-like [Jatropha curcas]
10 Hb_000045_230 0.1665888666 - - PREDICTED: uncharacterized acetyltransferase At3g50280 [Jatropha curcas]
11 Hb_011283_010 0.1740040031 - - PREDICTED: caffeic acid 3-O-methyltransferase-like [Jatropha curcas]
12 Hb_001699_240 0.1745818605 - - PREDICTED: naringenin,2-oxoglutarate 3-dioxygenase [Jatropha curcas]
13 Hb_000513_110 0.1746149684 - - PREDICTED: germin-like protein subfamily 1 member 13 [Populus euphratica]
14 Hb_000617_340 0.1747433592 - - respiratory burst oxidase B [Manihot esculenta]
15 Hb_000933_200 0.1758989235 - - Cationic peroxidase 2 precursor, putative [Ricinus communis]
16 Hb_005000_310 0.1776000782 - - PREDICTED: uncharacterized protein LOC105637900 [Jatropha curcas]
17 Hb_027445_090 0.1783116464 - - oleosin 18.2 kDa-like [Jatropha curcas]
18 Hb_028008_010 0.1821708762 - - PREDICTED: probable xyloglucan endotransglucosylase/hydrolase protein 23 [Jatropha curcas]
19 Hb_004195_240 0.1831767658 - - Peroxidase 72 precursor, putative [Ricinus communis]
20 Hb_000021_090 0.1837734146 - - -

Gene co-expression network

sample Hb_080225_010 Hb_080225_010 Hb_000256_100 Hb_000256_100 Hb_080225_010--Hb_000256_100 Hb_003057_080 Hb_003057_080 Hb_080225_010--Hb_003057_080 Hb_000347_550 Hb_000347_550 Hb_080225_010--Hb_000347_550 Hb_000614_180 Hb_000614_180 Hb_080225_010--Hb_000614_180 Hb_000086_730 Hb_000086_730 Hb_080225_010--Hb_000086_730 Hb_005000_040 Hb_005000_040 Hb_080225_010--Hb_005000_040 Hb_027445_090 Hb_027445_090 Hb_000256_100--Hb_027445_090 Hb_002057_010 Hb_002057_010 Hb_000256_100--Hb_002057_010 Hb_000256_100--Hb_005000_040 Hb_000256_100--Hb_003057_080 Hb_000617_340 Hb_000617_340 Hb_000256_100--Hb_000617_340 Hb_000045_230 Hb_000045_230 Hb_003057_080--Hb_000045_230 Hb_002311_240 Hb_002311_240 Hb_003057_080--Hb_002311_240 Hb_000019_220 Hb_000019_220 Hb_003057_080--Hb_000019_220 Hb_003057_080--Hb_000347_550 Hb_011283_010 Hb_011283_010 Hb_003057_080--Hb_011283_010 Hb_004195_240 Hb_004195_240 Hb_000347_550--Hb_004195_240 Hb_000300_450 Hb_000300_450 Hb_000347_550--Hb_000300_450 Hb_148435_010 Hb_148435_010 Hb_000347_550--Hb_148435_010 Hb_148914_010 Hb_148914_010 Hb_000347_550--Hb_148914_010 Hb_010407_120 Hb_010407_120 Hb_000347_550--Hb_010407_120 Hb_005000_310 Hb_005000_310 Hb_000614_180--Hb_005000_310 Hb_002475_070 Hb_002475_070 Hb_000614_180--Hb_002475_070 Hb_000614_180--Hb_148435_010 Hb_000297_180 Hb_000297_180 Hb_000614_180--Hb_000297_180 Hb_002521_010 Hb_002521_010 Hb_000614_180--Hb_002521_010 Hb_000347_530 Hb_000347_530 Hb_000614_180--Hb_000347_530 Hb_000194_080 Hb_000194_080 Hb_000086_730--Hb_000194_080 Hb_000086_730--Hb_005000_040 Hb_003064_010 Hb_003064_010 Hb_000086_730--Hb_003064_010 Hb_000086_730--Hb_000347_530 Hb_000800_060 Hb_000800_060 Hb_000086_730--Hb_000800_060 Hb_005000_040--Hb_002057_010 Hb_005000_040--Hb_148435_010 Hb_007044_070 Hb_007044_070 Hb_005000_040--Hb_007044_070 Hb_000748_070 Hb_000748_070 Hb_005000_040--Hb_000748_070 Hb_001936_030 Hb_001936_030 Hb_005000_040--Hb_001936_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0452555 0.0866247 0.179479 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0971476 0 1.56809 0

CAGE analysis