Hb_080477_050

Information

Type -
Description -
Location Contig80477: 36329-46201
Sequence    

Annotation

kegg
ID csv:101211888
description uncharacterized LOC101211888
nr
ID EPS58439.1
description hypothetical protein M569_16374 [Genlisea aurea]
swissprot
ID -
description -
trembl
ID S8BVQ8
description Uncharacterized protein OS=Genlisea aurea GN=M569_16374 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_58944: 45567-45957
cDNA
(Sanger)
(ID:Location)		 007_F24r.ab1: 38076-38621 , 008_D04r.ab1: 46092-46520 , 016_C23.ab1: 45567-45957

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_080477_050 0.0 - - hypothetical protein M569_16374 [Genlisea aurea]
2 Hb_000419_040 0.12066608 - - chorismate synthase [Hevea brasiliensis]
3 Hb_002936_050 0.1303817612 transcription factor TF Family: ARR-B PREDICTED: two-component response regulator ARR18 isoform X2 [Jatropha curcas]
4 Hb_000003_840 0.1339613015 - - multidrug/pheromone exporter protein [Hevea brasiliensis]
5 Hb_002897_060 0.1465014919 - - PREDICTED: uncharacterized protein LOC105649233 [Jatropha curcas]
6 Hb_012573_030 0.1469815486 - - conserved hypothetical protein [Ricinus communis]
7 Hb_054865_130 0.1473575423 - - acyltransferase, putative [Ricinus communis]
8 Hb_009812_020 0.14963433 - - -
9 Hb_009265_060 0.1499895284 - - PREDICTED: pyruvate kinase, cytosolic isozyme [Jatropha curcas]
10 Hb_001439_170 0.1513498885 - - PREDICTED: pectinesterase 31-like isoform X2 [Jatropha curcas]
11 Hb_171554_080 0.1523399544 - - PREDICTED: uncharacterized protein At1g04910 [Jatropha curcas]
12 Hb_002600_100 0.1548411983 - - PREDICTED: putative endo-1,3(4)-beta-glucanase 2 [Jatropha curcas]
13 Hb_012522_030 0.1553906497 - - ankyrin repeat-containing protein, putative [Ricinus communis]
14 Hb_001863_480 0.1565610746 - - PREDICTED: uncharacterized protein LOC105630612 [Jatropha curcas]
15 Hb_000165_010 0.1570267456 - - hypothetical protein POPTR_0010s19120g [Populus trichocarpa]
16 Hb_001278_050 0.1573417394 - - PREDICTED: uncharacterized protein LOC105636924 [Jatropha curcas]
17 Hb_000345_030 0.1589515845 - - REF-like stress related protein 1 [Hevea brasiliensis]
18 Hb_002027_400 0.1611000011 - - PREDICTED: auxin response factor 23-like [Jatropha curcas]
19 Hb_000622_040 0.1611687849 - - PREDICTED: uncharacterized protein LOC104596457 isoform X1 [Nelumbo nucifera]
20 Hb_002735_060 0.1623942735 - - PREDICTED: desumoylating isopeptidase 1 [Jatropha curcas]

Gene co-expression network

sample Hb_080477_050 Hb_080477_050 Hb_000419_040 Hb_000419_040 Hb_080477_050--Hb_000419_040 Hb_002936_050 Hb_002936_050 Hb_080477_050--Hb_002936_050 Hb_000003_840 Hb_000003_840 Hb_080477_050--Hb_000003_840 Hb_002897_060 Hb_002897_060 Hb_080477_050--Hb_002897_060 Hb_012573_030 Hb_012573_030 Hb_080477_050--Hb_012573_030 Hb_054865_130 Hb_054865_130 Hb_080477_050--Hb_054865_130 Hb_012522_030 Hb_012522_030 Hb_000419_040--Hb_012522_030 Hb_000419_040--Hb_002936_050 Hb_009265_060 Hb_009265_060 Hb_000419_040--Hb_009265_060 Hb_001863_480 Hb_001863_480 Hb_000419_040--Hb_001863_480 Hb_171554_080 Hb_171554_080 Hb_000419_040--Hb_171554_080 Hb_000345_030 Hb_000345_030 Hb_000419_040--Hb_000345_030 Hb_042729_010 Hb_042729_010 Hb_002936_050--Hb_042729_010 Hb_002936_050--Hb_000003_840 Hb_002936_050--Hb_012522_030 Hb_001278_050 Hb_001278_050 Hb_002936_050--Hb_001278_050 Hb_002936_050--Hb_002897_060 Hb_000003_840--Hb_042729_010 Hb_002685_090 Hb_002685_090 Hb_000003_840--Hb_002685_090 Hb_143629_090 Hb_143629_090 Hb_000003_840--Hb_143629_090 Hb_012725_110 Hb_012725_110 Hb_000003_840--Hb_012725_110 Hb_002392_040 Hb_002392_040 Hb_002897_060--Hb_002392_040 Hb_004882_020 Hb_004882_020 Hb_002897_060--Hb_004882_020 Hb_000983_100 Hb_000983_100 Hb_002897_060--Hb_000983_100 Hb_003943_030 Hb_003943_030 Hb_002897_060--Hb_003943_030 Hb_003151_050 Hb_003151_050 Hb_002897_060--Hb_003151_050 Hb_012573_030--Hb_171554_080 Hb_012573_030--Hb_009265_060 Hb_012573_030--Hb_054865_130 Hb_001006_180 Hb_001006_180 Hb_012573_030--Hb_001006_180 Hb_004048_050 Hb_004048_050 Hb_012573_030--Hb_004048_050 Hb_024714_060 Hb_024714_060 Hb_012573_030--Hb_024714_060 Hb_054865_130--Hb_171554_080 Hb_054865_130--Hb_009265_060 Hb_005463_020 Hb_005463_020 Hb_054865_130--Hb_005463_020 Hb_054865_130--Hb_004048_050 Hb_003020_310 Hb_003020_310 Hb_054865_130--Hb_003020_310
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
46.2858 15.2194 1.84722 7.54825 29.8148 15.8172
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
104.498 48.3846 96.1051 6.46821 11.1122

CAGE analysis