Hb_080477_080

Information

Type -
Description -
Location Contig80477: 63907-68086
Sequence    

Annotation

kegg
ID pop:POPTR_0001s33670g
description POPTRDRAFT_707038; hypothetical protein
nr
ID XP_012445911.1
description PREDICTED: protein NUCLEAR FUSION DEFECTIVE 4 isoform X1 [Gossypium raimondii]
swissprot
ID F4I9E1
description Protein NUCLEAR FUSION DEFECTIVE 4 OS=Arabidopsis thaliana GN=NFD4 PE=3 SV=1
trembl
ID A0A0D2NEZ0
description Gossypium raimondii chromosome 1, whole genome shotgun sequence OS=Gossypium raimondii GN=B456_001G272000 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_58946: 63953-64155 , PASA_asmbl_58947: 64487-64697
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_080477_080 0.0 - - PREDICTED: protein NUCLEAR FUSION DEFECTIVE 4 isoform X1 [Gossypium raimondii]
2 Hb_003710_020 0.0934151139 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At1g53440 isoform X1 [Jatropha curcas]
3 Hb_158092_040 0.0986275069 - - PREDICTED: uncharacterized protein LOC105647294 [Jatropha curcas]
4 Hb_004522_030 0.1246747451 - - PREDICTED: 6-phosphogluconate dehydrogenase, decarboxylating 3 [Jatropha curcas]
5 Hb_143766_080 0.1259808492 - - PREDICTED: uncharacterized protein LOC105637797 isoform X1 [Jatropha curcas]
6 Hb_001054_090 0.1303381794 - - Potassium channel SKOR, putative [Ricinus communis]
7 Hb_000062_530 0.1411803717 - - PREDICTED: GDP-mannose transporter GONST3-like [Populus euphratica]
8 Hb_007138_030 0.143282509 - - PREDICTED: putative disease resistance protein At4g11170 [Jatropha curcas]
9 Hb_000002_360 0.1448992563 - - hypothetical protein POPTR_0008s16470g [Populus trichocarpa]
10 Hb_042509_020 0.1503173575 - - hypothetical protein JCGZ_19555 [Jatropha curcas]
11 Hb_001545_130 0.1513616082 - - sur2 hydroxylase/desaturase, putative [Ricinus communis]
12 Hb_001148_100 0.1523955156 - - -
13 Hb_000181_210 0.1531727126 - - Phytosulfokine receptor precursor, putative [Ricinus communis]
14 Hb_005333_080 0.1540695504 - - conserved hypothetical protein [Ricinus communis]
15 Hb_001119_070 0.1547421255 - - methylenetetrahydrofolate reductase, putative [Ricinus communis]
16 Hb_001178_090 0.1548714616 - - Monodehydroascorbate reductase family protein [Populus trichocarpa]
17 Hb_000696_070 0.1557577515 - - PREDICTED: aspartic proteinase-like protein 1 [Jatropha curcas]
18 Hb_005784_060 0.1566136519 - - PREDICTED: U-box domain-containing protein 28 [Jatropha curcas]
19 Hb_147245_010 0.1566976426 - - casein kinase, putative [Ricinus communis]
20 Hb_001247_270 0.1569499896 - - PREDICTED: probable L-cysteine desulfhydrase, chloroplastic [Jatropha curcas]

Gene co-expression network

sample Hb_080477_080 Hb_080477_080 Hb_003710_020 Hb_003710_020 Hb_080477_080--Hb_003710_020 Hb_158092_040 Hb_158092_040 Hb_080477_080--Hb_158092_040 Hb_004522_030 Hb_004522_030 Hb_080477_080--Hb_004522_030 Hb_143766_080 Hb_143766_080 Hb_080477_080--Hb_143766_080 Hb_001054_090 Hb_001054_090 Hb_080477_080--Hb_001054_090 Hb_000062_530 Hb_000062_530 Hb_080477_080--Hb_000062_530 Hb_003710_020--Hb_143766_080 Hb_003710_020--Hb_000062_530 Hb_034507_060 Hb_034507_060 Hb_003710_020--Hb_034507_060 Hb_001545_130 Hb_001545_130 Hb_003710_020--Hb_001545_130 Hb_003710_020--Hb_004522_030 Hb_006615_230 Hb_006615_230 Hb_158092_040--Hb_006615_230 Hb_001119_070 Hb_001119_070 Hb_158092_040--Hb_001119_070 Hb_005333_080 Hb_005333_080 Hb_158092_040--Hb_005333_080 Hb_158092_040--Hb_004522_030 Hb_134014_010 Hb_134014_010 Hb_158092_040--Hb_134014_010 Hb_000928_120 Hb_000928_120 Hb_004522_030--Hb_000928_120 Hb_010050_020 Hb_010050_020 Hb_004522_030--Hb_010050_020 Hb_007537_030 Hb_007537_030 Hb_004522_030--Hb_007537_030 Hb_000622_330 Hb_000622_330 Hb_004522_030--Hb_000622_330 Hb_003001_130 Hb_003001_130 Hb_004522_030--Hb_003001_130 Hb_004522_030--Hb_034507_060 Hb_001754_050 Hb_001754_050 Hb_143766_080--Hb_001754_050 Hb_004129_010 Hb_004129_010 Hb_143766_080--Hb_004129_010 Hb_143766_080--Hb_004522_030 Hb_000116_240 Hb_000116_240 Hb_143766_080--Hb_000116_240 Hb_004883_020 Hb_004883_020 Hb_143766_080--Hb_004883_020 Hb_001054_090--Hb_004522_030 Hb_009646_010 Hb_009646_010 Hb_001054_090--Hb_009646_010 Hb_001054_090--Hb_003710_020 Hb_047583_010 Hb_047583_010 Hb_001054_090--Hb_047583_010 Hb_001014_190 Hb_001014_190 Hb_001054_090--Hb_001014_190 Hb_000062_530--Hb_001545_130 Hb_004109_050 Hb_004109_050 Hb_000062_530--Hb_004109_050 Hb_000152_710 Hb_000152_710 Hb_000062_530--Hb_000152_710 Hb_019280_020 Hb_019280_020 Hb_000062_530--Hb_019280_020 Hb_012362_030 Hb_012362_030 Hb_000062_530--Hb_012362_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.461114 4.30089 4.5399 15.059 0.243248 0.558598
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.02614 1.00929 1.9198 8.00365 4.14857

CAGE analysis