Hb_080601_020

Information

Type -
Description -
Location Contig80601: 2053-2449
Sequence    

Annotation

kegg
ID rcu:RCOM_0507800
description Cytochrome c oxidase copper chaperone, putative
nr
ID XP_012084961.1
description PREDICTED: cytochrome c oxidase copper chaperone 1 [Jatropha curcas]
swissprot
ID Q9LJQ9
description Cytochrome c oxidase copper chaperone 1 OS=Arabidopsis thaliana GN=COX17-1 PE=2 SV=1
trembl
ID A0A067JW50
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_20993 PE=4 SV=1
Gene Ontology
ID GO:0005758
description cytochrome c oxidase copper chaperone 2-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_080601_020 0.0 - - PREDICTED: cytochrome c oxidase copper chaperone 1 [Jatropha curcas]
2 Hb_001220_010 0.0867003529 - - hypothetical protein JCGZ_00411 [Jatropha curcas]
3 Hb_007894_230 0.1060320315 - - 30S ribosomal protein S14, putative [Ricinus communis]
4 Hb_000710_070 0.1172645501 - - PREDICTED: uncharacterized protein LOC105645553 [Jatropha curcas]
5 Hb_002078_260 0.119346596 - - unknown [Populus trichocarpa]
6 Hb_016604_030 0.1279497 - - histone H4 [Zea mays]
7 Hb_001163_040 0.131102447 - - Cytochrome-c oxidases,electron carriers [Theobroma cacao]
8 Hb_002284_050 0.1315492558 - - hypothetical protein POPTR_0002s00740g [Populus trichocarpa]
9 Hb_006452_110 0.1371089078 - - Ubiquinol-cytochrome c reductase complex 7.8 kDa protein, putative [Ricinus communis]
10 Hb_132180_010 0.1381205442 - - PREDICTED: protein SPIRAL1-like 1 [Populus euphratica]
11 Hb_000635_070 0.1392516379 - - PREDICTED: probable signal peptidase complex subunit 1 [Jatropha curcas]
12 Hb_000215_200 0.1400853501 - - RecName: Full=Profilin-2; AltName: Full=Pollen allergen Hev b 8.0102; AltName: Allergen=Hev b 8.0102 [Hevea brasiliensis]
13 Hb_006995_040 0.1430002874 - - PREDICTED: LOW QUALITY PROTEIN: 14 kDa zinc-binding protein-like [Pyrus x bretschneideri]
14 Hb_082006_010 0.1458199026 - - conserved hypothetical protein [Ricinus communis]
15 Hb_001571_110 0.1461468262 - - PREDICTED: 60S ribosomal protein L44-like [Gossypium raimondii]
16 Hb_004602_030 0.1462364426 - - histone H4 [Zea mays]
17 Hb_001754_070 0.1464179728 - - hypothetical protein POPTR_0026s00250g [Populus trichocarpa]
18 Hb_172706_030 0.1464306848 - - PREDICTED: uncharacterized protein LOC105640907 [Jatropha curcas]
19 Hb_140543_010 0.1473204487 - - -
20 Hb_182964_010 0.1492784918 - - PREDICTED: uncharacterized protein LOC105642044 isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_080601_020 Hb_080601_020 Hb_001220_010 Hb_001220_010 Hb_080601_020--Hb_001220_010 Hb_007894_230 Hb_007894_230 Hb_080601_020--Hb_007894_230 Hb_000710_070 Hb_000710_070 Hb_080601_020--Hb_000710_070 Hb_002078_260 Hb_002078_260 Hb_080601_020--Hb_002078_260 Hb_016604_030 Hb_016604_030 Hb_080601_020--Hb_016604_030 Hb_001163_040 Hb_001163_040 Hb_080601_020--Hb_001163_040 Hb_001233_020 Hb_001233_020 Hb_001220_010--Hb_001233_020 Hb_132180_010 Hb_132180_010 Hb_001220_010--Hb_132180_010 Hb_000671_120 Hb_000671_120 Hb_001220_010--Hb_000671_120 Hb_004669_030 Hb_004669_030 Hb_001220_010--Hb_004669_030 Hb_001220_010--Hb_007894_230 Hb_007894_230--Hb_002078_260 Hb_001935_150 Hb_001935_150 Hb_007894_230--Hb_001935_150 Hb_001571_110 Hb_001571_110 Hb_007894_230--Hb_001571_110 Hb_005694_020 Hb_005694_020 Hb_007894_230--Hb_005694_020 Hb_002284_050 Hb_002284_050 Hb_000710_070--Hb_002284_050 Hb_041205_010 Hb_041205_010 Hb_000710_070--Hb_041205_010 Hb_000641_020 Hb_000641_020 Hb_000710_070--Hb_000641_020 Hb_029142_070 Hb_029142_070 Hb_000710_070--Hb_029142_070 Hb_000710_070--Hb_001220_010 Hb_030982_020 Hb_030982_020 Hb_002078_260--Hb_030982_020 Hb_002078_260--Hb_005694_020 Hb_002078_260--Hb_132180_010 Hb_082006_010 Hb_082006_010 Hb_002078_260--Hb_082006_010 Hb_000340_520 Hb_000340_520 Hb_002078_260--Hb_000340_520 Hb_000635_070 Hb_000635_070 Hb_016604_030--Hb_000635_070 Hb_016604_030--Hb_082006_010 Hb_000473_020 Hb_000473_020 Hb_016604_030--Hb_000473_020 Hb_005000_330 Hb_005000_330 Hb_016604_030--Hb_005000_330 Hb_182964_010 Hb_182964_010 Hb_016604_030--Hb_182964_010 Hb_003536_110 Hb_003536_110 Hb_016604_030--Hb_003536_110 Hb_011512_050 Hb_011512_050 Hb_001163_040--Hb_011512_050 Hb_001163_040--Hb_002078_260 Hb_001163_040--Hb_001220_010 Hb_006452_110 Hb_006452_110 Hb_001163_040--Hb_006452_110 Hb_001163_040--Hb_007894_230
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
10.7932 1.49541 7.91903 54.7953 4.71693 44.3812
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
37.1044 52.6219 20.5751 7.60774 9.28431

CAGE analysis