Hb_080922_010

Information

Type -
Description -
Location Contig80922: 15-770
Sequence    

Annotation

kegg
ID rcu:RCOM_1113060
description leucine-rich repeat receptor protein kinase exs precursor, putative (EC:1.3.1.74)
nr
ID XP_002531725.1
description leucine-rich repeat receptor protein kinase exs precursor, putative [Ricinus communis]
swissprot
ID Q9FL28
description LRR receptor-like serine/threonine-protein kinase FLS2 OS=Arabidopsis thaliana GN=FLS2 PE=1 SV=1
trembl
ID B9T0F6
description Leucine-rich repeat receptor protein kinase exs, putative OS=Ricinus communis GN=RCOM_1113060 PE=4 SV=1
Gene Ontology
ID GO:0016491
description disease resistance family protein lrr family

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_080922_010 0.0 - - leucine-rich repeat receptor protein kinase exs precursor, putative [Ricinus communis]
2 Hb_003536_020 0.0491461876 - - PREDICTED: splicing factor 3A subunit 2 [Jatropha curcas]
3 Hb_000445_270 0.0551179065 - - ATP binding protein, putative [Ricinus communis]
4 Hb_007477_060 0.0700145706 - - unknown [Medicago truncatula]
5 Hb_002871_180 0.0769688609 - - photosystem II 10 kDa polypeptide, chloroplastic [Jatropha curcas]
6 Hb_000705_010 0.0776017803 - - hypothetical protein CICLE_v10027296mg [Citrus clementina]
7 Hb_005329_010 0.0787124799 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At1g11410 [Jatropha curcas]
8 Hb_005649_060 0.0798641231 - - PREDICTED: uncharacterized protein LOC105644161 [Jatropha curcas]
9 Hb_005211_080 0.0829116782 - - hypothetical protein POPTR_0010s13740g [Populus trichocarpa]
10 Hb_000270_090 0.0867992831 - - nitrate transporter, putative [Ricinus communis]
11 Hb_001766_160 0.0868940909 - - Serine/threonine-protein kinase SAPK1 [Gossypium arboreum]
12 Hb_001006_150 0.0907309099 transcription factor TF Family: C2H2 zinc finger protein, putative [Ricinus communis]
13 Hb_001699_140 0.0908883573 - - PREDICTED: ferredoxin--NADP reductase, leaf isozyme, chloroplastic [Jatropha curcas]
14 Hb_002093_020 0.091637947 - - hypothetical protein POPTR_0008s02960g [Populus trichocarpa]
15 Hb_000101_330 0.0940234506 - - -
16 Hb_000359_050 0.0953640113 - - Oxygen-evolving enhancer protein 2, chloroplast precursor, putative [Ricinus communis]
17 Hb_000088_230 0.0963773897 - - hypothetical protein POPTR_0013s11340g [Populus trichocarpa]
18 Hb_003937_010 0.098337218 - - hypothetical protein JCGZ_20930 [Jatropha curcas]
19 Hb_001751_050 0.0990156898 - - PREDICTED: phytol kinase 1, chloroplastic [Jatropha curcas]
20 Hb_001321_010 0.1004860651 - - HIGH-CHLOROPHYLL-FLUORESCENCE 101 family protein [Populus trichocarpa]

Gene co-expression network

sample Hb_080922_010 Hb_080922_010 Hb_003536_020 Hb_003536_020 Hb_080922_010--Hb_003536_020 Hb_000445_270 Hb_000445_270 Hb_080922_010--Hb_000445_270 Hb_007477_060 Hb_007477_060 Hb_080922_010--Hb_007477_060 Hb_002871_180 Hb_002871_180 Hb_080922_010--Hb_002871_180 Hb_000705_010 Hb_000705_010 Hb_080922_010--Hb_000705_010 Hb_005329_010 Hb_005329_010 Hb_080922_010--Hb_005329_010 Hb_003536_020--Hb_007477_060 Hb_000101_330 Hb_000101_330 Hb_003536_020--Hb_000101_330 Hb_001699_140 Hb_001699_140 Hb_003536_020--Hb_001699_140 Hb_003536_020--Hb_002871_180 Hb_000116_090 Hb_000116_090 Hb_003536_020--Hb_000116_090 Hb_001006_150 Hb_001006_150 Hb_000445_270--Hb_001006_150 Hb_005649_060 Hb_005649_060 Hb_000445_270--Hb_005649_060 Hb_000359_050 Hb_000359_050 Hb_000445_270--Hb_000359_050 Hb_000445_270--Hb_005329_010 Hb_001864_050 Hb_001864_050 Hb_000445_270--Hb_001864_050 Hb_007477_060--Hb_000101_330 Hb_007477_060--Hb_002871_180 Hb_006570_030 Hb_006570_030 Hb_007477_060--Hb_006570_030 Hb_001766_160 Hb_001766_160 Hb_007477_060--Hb_001766_160 Hb_001322_120 Hb_001322_120 Hb_007477_060--Hb_001322_120 Hb_002871_180--Hb_005649_060 Hb_002871_180--Hb_006570_030 Hb_002871_180--Hb_001766_160 Hb_002871_180--Hb_001322_120 Hb_002871_180--Hb_000101_330 Hb_063405_010 Hb_063405_010 Hb_000705_010--Hb_063405_010 Hb_000270_090 Hb_000270_090 Hb_000705_010--Hb_000270_090 Hb_001321_010 Hb_001321_010 Hb_000705_010--Hb_001321_010 Hb_000697_020 Hb_000697_020 Hb_000705_010--Hb_000697_020 Hb_002010_030 Hb_002010_030 Hb_000705_010--Hb_002010_030 Hb_005211_080 Hb_005211_080 Hb_005329_010--Hb_005211_080 Hb_005329_010--Hb_001766_160 Hb_000088_230 Hb_000088_230 Hb_005329_010--Hb_000088_230 Hb_005329_010--Hb_001006_150 Hb_005329_010--Hb_001322_120 Hb_000460_040 Hb_000460_040 Hb_005329_010--Hb_000460_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.132677 0.854223 0.196217 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0464302 1.1422

CAGE analysis