Hb_080952_010

Information

Type -
Description -
Location Contig80952: 10321-12660
Sequence    

Annotation

kegg
ID pmum:103325304
description pentatricopeptide repeat-containing protein At4g20770
nr
ID XP_012075518.1
description PREDICTED: pentatricopeptide repeat-containing protein At4g20770 [Jatropha curcas]
swissprot
ID Q9SVH0
description Pentatricopeptide repeat-containing protein At4g20770 OS=Arabidopsis thaliana GN=PCMP-E35 PE=3 SV=2
trembl
ID A0A067KIM3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_09136 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_080952_010 0.0 - - PREDICTED: pentatricopeptide repeat-containing protein At4g20770 [Jatropha curcas]
2 Hb_002316_150 0.1231041746 transcription factor TF Family: IWS1 PREDICTED: uncharacterized protein LOC105640420 [Jatropha curcas]
3 Hb_006718_020 0.1242909041 - - PREDICTED: uncharacterized protein LOC105649330 isoform X2 [Jatropha curcas]
4 Hb_000140_230 0.1248520828 - - PREDICTED: pentatricopeptide repeat-containing protein At3g61520, mitochondrial-like [Jatropha curcas]
5 Hb_002918_180 0.126100639 - - hypothetical protein POPTR_0004s04740g [Populus trichocarpa]
6 Hb_000432_060 0.1272045197 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
7 Hb_168697_010 0.1301781174 - - hypothetical protein JCGZ_16772 [Jatropha curcas]
8 Hb_002205_190 0.1308197422 - - PREDICTED: U-box domain-containing protein 62-like [Jatropha curcas]
9 Hb_003020_050 0.1318065656 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
10 Hb_000549_040 0.1330595298 - - PREDICTED: pentatricopeptide repeat-containing protein At3g12770-like isoform X1 [Jatropha curcas]
11 Hb_005188_020 0.1370309176 - - PREDICTED: pentatricopeptide repeat-containing protein At3g02330 [Jatropha curcas]
12 Hb_004690_040 0.1381566683 - - PREDICTED: pentatricopeptide repeat-containing protein At1g71420 [Jatropha curcas]
13 Hb_002235_040 0.1397169508 - - PREDICTED: pentatricopeptide repeat-containing protein At3g29230 [Jatropha curcas]
14 Hb_002496_040 0.139936353 - - PREDICTED: pentatricopeptide repeat-containing protein At2g03380, mitochondrial [Jatropha curcas]
15 Hb_000011_330 0.1404850732 - - fyve finger-containing phosphoinositide kinase, fyv1, putative [Ricinus communis]
16 Hb_000567_380 0.1430817961 - - ubiquitin specific protease 39 and snrnp assembly factor, putative [Ricinus communis]
17 Hb_011942_070 0.1442637232 - - PREDICTED: pentatricopeptide repeat-containing protein At1g20230-like [Jatropha curcas]
18 Hb_008695_140 0.1494732272 - - Vacuolar protein sorting-associated protein VPS9, putative [Ricinus communis]
19 Hb_012325_020 0.1513581937 - - PREDICTED: ATPase family AAA domain-containing protein At1g05910 isoform X1 [Jatropha curcas]
20 Hb_001999_090 0.1520335076 - - PREDICTED: pentatricopeptide repeat-containing protein At2g29760, chloroplastic [Jatropha curcas]

Gene co-expression network

sample Hb_080952_010 Hb_080952_010 Hb_002316_150 Hb_002316_150 Hb_080952_010--Hb_002316_150 Hb_006718_020 Hb_006718_020 Hb_080952_010--Hb_006718_020 Hb_000140_230 Hb_000140_230 Hb_080952_010--Hb_000140_230 Hb_002918_180 Hb_002918_180 Hb_080952_010--Hb_002918_180 Hb_000432_060 Hb_000432_060 Hb_080952_010--Hb_000432_060 Hb_168697_010 Hb_168697_010 Hb_080952_010--Hb_168697_010 Hb_002316_150--Hb_006718_020 Hb_000270_670 Hb_000270_670 Hb_002316_150--Hb_000270_670 Hb_007441_220 Hb_007441_220 Hb_002316_150--Hb_007441_220 Hb_000866_120 Hb_000866_120 Hb_002316_150--Hb_000866_120 Hb_000172_110 Hb_000172_110 Hb_002316_150--Hb_000172_110 Hb_002316_150--Hb_000140_230 Hb_001999_090 Hb_001999_090 Hb_006718_020--Hb_001999_090 Hb_006718_020--Hb_000270_670 Hb_002316_160 Hb_002316_160 Hb_006718_020--Hb_002316_160 Hb_000130_490 Hb_000130_490 Hb_006718_020--Hb_000130_490 Hb_006718_020--Hb_007441_220 Hb_000264_320 Hb_000264_320 Hb_000140_230--Hb_000264_320 Hb_003020_050 Hb_003020_050 Hb_000140_230--Hb_003020_050 Hb_000140_230--Hb_168697_010 Hb_008775_040 Hb_008775_040 Hb_000140_230--Hb_008775_040 Hb_048219_010 Hb_048219_010 Hb_000140_230--Hb_048219_010 Hb_002235_040 Hb_002235_040 Hb_002918_180--Hb_002235_040 Hb_002918_180--Hb_002316_150 Hb_002918_180--Hb_000866_120 Hb_029142_050 Hb_029142_050 Hb_002918_180--Hb_029142_050 Hb_002918_180--Hb_001999_090 Hb_022250_090 Hb_022250_090 Hb_002918_180--Hb_022250_090 Hb_001171_060 Hb_001171_060 Hb_000432_060--Hb_001171_060 Hb_008770_040 Hb_008770_040 Hb_000432_060--Hb_008770_040 Hb_000432_060--Hb_168697_010 Hb_000442_080 Hb_000442_080 Hb_000432_060--Hb_000442_080 Hb_000432_060--Hb_000140_230 Hb_000680_050 Hb_000680_050 Hb_168697_010--Hb_000680_050 Hb_010874_020 Hb_010874_020 Hb_168697_010--Hb_010874_020 Hb_168697_010--Hb_048219_010 Hb_168697_010--Hb_003020_050 Hb_009486_200 Hb_009486_200 Hb_168697_010--Hb_009486_200
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.624603 1.29406 0.519556 0.332836 0.460357 0.818645
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.284814 0.747041 2.38914 1.02693 0.824432

CAGE analysis