Hb_081879_030

Information

Type -
Description -
Location Contig81879: 17942-29525
Sequence    

Annotation

kegg
ID rcu:RCOM_0399490
description WD-repeat protein, putative
nr
ID XP_012077918.1
description PREDICTED: U3 small nucleolar RNA-associated protein 21 homolog [Jatropha curcas]
swissprot
ID O14053
description U3 small nucleolar RNA-associated protein 21 homolog OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPCC1672.07 PE=3 SV=1
trembl
ID A0A067LEM6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_17290 PE=4 SV=1
Gene Ontology
ID GO:0032040
description u3 small nucleolar rna-associated protein 21 homolog

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_59520: 17924-18512 , PASA_asmbl_59521: 18738-19646 , PASA_asmbl_59522: 22970-27363 , PASA_asmbl_59524: 27369-28642 , PASA_asmbl_59525: 28748-29454
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_081879_030 0.0 - - PREDICTED: U3 small nucleolar RNA-associated protein 21 homolog [Jatropha curcas]
2 Hb_000347_130 0.0792781889 - - PREDICTED: nuclear pore complex protein NUP107 [Jatropha curcas]
3 Hb_000436_040 0.0797011105 - - PREDICTED: transportin-1 [Jatropha curcas]
4 Hb_000743_050 0.0818700792 - - unnamed protein product [Vitis vinifera]
5 Hb_002903_080 0.0834984169 - - PREDICTED: splicing factor 3B subunit 2 [Jatropha curcas]
6 Hb_025012_010 0.0837348292 - - PREDICTED: importin-4 [Vitis vinifera]
7 Hb_042487_010 0.0844465537 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 9-like [Jatropha curcas]
8 Hb_000699_250 0.0864362972 - - Poly(rC)-binding protein, putative [Ricinus communis]
9 Hb_000340_160 0.0879269308 - - PREDICTED: elongation factor Tu, mitochondrial [Jatropha curcas]
10 Hb_000329_490 0.089821017 - - hypothetical protein JCGZ_14582 [Jatropha curcas]
11 Hb_007849_020 0.090247496 transcription factor TF Family: MYB cell division control protein, putative [Ricinus communis]
12 Hb_005129_050 0.096410042 - - PREDICTED: probable 28S rRNA (cytosine(4447)-C(5))-methyltransferase [Jatropha curcas]
13 Hb_125092_020 0.0971881907 - - PREDICTED: nucleolin 1-like isoform X1 [Jatropha curcas]
14 Hb_001433_190 0.0980479308 - - PREDICTED: eukaryotic translation initiation factor 3 subunit A [Jatropha curcas]
15 Hb_002471_210 0.0984763334 - - PREDICTED: THO complex subunit 2 [Jatropha curcas]
16 Hb_001322_210 0.0986230669 transcription factor TF Family: SET PREDICTED: histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH6-like [Jatropha curcas]
17 Hb_004037_030 0.0987464084 - - PREDICTED: DNA repair endonuclease UVH1 isoform X2 [Jatropha curcas]
18 Hb_000239_070 0.1015216925 - - PREDICTED: activating signal cointegrator 1 complex subunit 2 isoform X1 [Jatropha curcas]
19 Hb_000136_150 0.1023154821 - - hypothetical protein VITISV_038366 [Vitis vinifera]
20 Hb_000475_020 0.1025376381 - - PREDICTED: dehydrogenase/reductase SDR family member on chromosome X homolog isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_081879_030 Hb_081879_030 Hb_000347_130 Hb_000347_130 Hb_081879_030--Hb_000347_130 Hb_000436_040 Hb_000436_040 Hb_081879_030--Hb_000436_040 Hb_000743_050 Hb_000743_050 Hb_081879_030--Hb_000743_050 Hb_002903_080 Hb_002903_080 Hb_081879_030--Hb_002903_080 Hb_025012_010 Hb_025012_010 Hb_081879_030--Hb_025012_010 Hb_042487_010 Hb_042487_010 Hb_081879_030--Hb_042487_010 Hb_000600_070 Hb_000600_070 Hb_000347_130--Hb_000600_070 Hb_003966_030 Hb_003966_030 Hb_000347_130--Hb_003966_030 Hb_000567_010 Hb_000567_010 Hb_000347_130--Hb_000567_010 Hb_005494_020 Hb_005494_020 Hb_000347_130--Hb_005494_020 Hb_000347_130--Hb_025012_010 Hb_003428_070 Hb_003428_070 Hb_000347_130--Hb_003428_070 Hb_021409_170 Hb_021409_170 Hb_000436_040--Hb_021409_170 Hb_000023_190 Hb_000023_190 Hb_000436_040--Hb_000023_190 Hb_000436_040--Hb_000347_130 Hb_003464_020 Hb_003464_020 Hb_000436_040--Hb_003464_020 Hb_004218_240 Hb_004218_240 Hb_000436_040--Hb_004218_240 Hb_002893_150 Hb_002893_150 Hb_000436_040--Hb_002893_150 Hb_000739_220 Hb_000739_220 Hb_000743_050--Hb_000739_220 Hb_000158_100 Hb_000158_100 Hb_000743_050--Hb_000158_100 Hb_000743_050--Hb_000347_130 Hb_001322_210 Hb_001322_210 Hb_000743_050--Hb_001322_210 Hb_000743_050--Hb_025012_010 Hb_002903_080--Hb_000436_040 Hb_004096_100 Hb_004096_100 Hb_002903_080--Hb_004096_100 Hb_002903_080--Hb_003464_020 Hb_010931_040 Hb_010931_040 Hb_002903_080--Hb_010931_040 Hb_002903_080--Hb_000347_130 Hb_002027_270 Hb_002027_270 Hb_025012_010--Hb_002027_270 Hb_004619_050 Hb_004619_050 Hb_025012_010--Hb_004619_050 Hb_007904_220 Hb_007904_220 Hb_025012_010--Hb_007904_220 Hb_025012_010--Hb_003428_070 Hb_001040_160 Hb_001040_160 Hb_025012_010--Hb_001040_160 Hb_000699_250 Hb_000699_250 Hb_042487_010--Hb_000699_250 Hb_007849_020 Hb_007849_020 Hb_042487_010--Hb_007849_020 Hb_029142_010 Hb_029142_010 Hb_042487_010--Hb_029142_010 Hb_042487_010--Hb_025012_010 Hb_006816_300 Hb_006816_300 Hb_042487_010--Hb_006816_300 Hb_000340_160 Hb_000340_160 Hb_042487_010--Hb_000340_160
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
16.9704 9.52426 5.52484 5.52279 19.8078 37.0424
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.40669 5.50586 8.8671 11.1767 7.10109

CAGE analysis