Hb_082006_010

Information

Type -
Description -
Location Contig82006: 1480-1798
Sequence    

Annotation

kegg
ID rcu:RCOM_1606460
description hypothetical protein
nr
ID XP_002525483.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9SHL4
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1606460 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_082006_010 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_000635_070 0.0574977832 - - PREDICTED: probable signal peptidase complex subunit 1 [Jatropha curcas]
3 Hb_002562_110 0.0897760597 - - PREDICTED: CBS domain-containing protein CBSX3, mitochondrial [Jatropha curcas]
4 Hb_009270_030 0.0980861254 - - Dehydration-responsive protein RD22 precursor, putative [Ricinus communis]
5 Hb_002078_260 0.1011179449 - - unknown [Populus trichocarpa]
6 Hb_129672_010 0.1074427143 - - PREDICTED: signal peptidase complex subunit 3B [Jatropha curcas]
7 Hb_041205_010 0.1084736757 - - conserved hypothetical protein [Ricinus communis]
8 Hb_000125_010 0.1097252576 transcription factor TF Family: mTERF -
9 Hb_002259_160 0.1125853899 - - hypothetical protein PSEUBRA_SCAF14g01508 [Pseudozyma brasiliensis GHG001]
10 Hb_016604_030 0.1144745489 - - histone H4 [Zea mays]
11 Hb_000326_090 0.1165721836 - - PREDICTED: glycine-rich RNA-binding protein GRP1A-like [Nelumbo nucifera]
12 Hb_003352_040 0.1225537624 - - PREDICTED: 26S proteasome regulatory subunit RPN13 [Jatropha curcas]
13 Hb_001250_060 0.1227818901 - - PREDICTED: signal recognition particle receptor subunit beta-like [Jatropha curcas]
14 Hb_005694_020 0.1265762159 - - PREDICTED: ORM1-like protein 2 [Gossypium raimondii]
15 Hb_001747_030 0.1271126614 - - hypothetical protein F383_08210 [Gossypium arboreum]
16 Hb_000340_520 0.1299147153 - - PREDICTED: cytochrome c oxidase subunit 5C [Jatropha curcas]
17 Hb_000342_160 0.1314138274 - - PREDICTED: sarcoplasmic reticulum histidine-rich calcium-binding protein [Jatropha curcas]
18 Hb_066768_010 0.1350180892 - - PREDICTED: outer envelope pore protein 16-3, chloroplastic/mitochondrial [Jatropha curcas]
19 Hb_011214_100 0.1351473738 - - PREDICTED: uncharacterized protein LOC105633003 [Jatropha curcas]
20 Hb_030982_020 0.1353758538 - - PREDICTED: ubiquitin domain-containing protein 1 [Jatropha curcas]

Gene co-expression network

sample Hb_082006_010 Hb_082006_010 Hb_000635_070 Hb_000635_070 Hb_082006_010--Hb_000635_070 Hb_002562_110 Hb_002562_110 Hb_082006_010--Hb_002562_110 Hb_009270_030 Hb_009270_030 Hb_082006_010--Hb_009270_030 Hb_002078_260 Hb_002078_260 Hb_082006_010--Hb_002078_260 Hb_129672_010 Hb_129672_010 Hb_082006_010--Hb_129672_010 Hb_041205_010 Hb_041205_010 Hb_082006_010--Hb_041205_010 Hb_000635_070--Hb_009270_030 Hb_016604_030 Hb_016604_030 Hb_000635_070--Hb_016604_030 Hb_004669_030 Hb_004669_030 Hb_000635_070--Hb_004669_030 Hb_000635_070--Hb_129672_010 Hb_000635_070--Hb_002562_110 Hb_002562_110--Hb_002078_260 Hb_002562_110--Hb_009270_030 Hb_002562_110--Hb_004669_030 Hb_000016_060 Hb_000016_060 Hb_002562_110--Hb_000016_060 Hb_009270_030--Hb_129672_010 Hb_030982_020 Hb_030982_020 Hb_009270_030--Hb_030982_020 Hb_011214_100 Hb_011214_100 Hb_009270_030--Hb_011214_100 Hb_007894_230 Hb_007894_230 Hb_002078_260--Hb_007894_230 Hb_002078_260--Hb_030982_020 Hb_005694_020 Hb_005694_020 Hb_002078_260--Hb_005694_020 Hb_132180_010 Hb_132180_010 Hb_002078_260--Hb_132180_010 Hb_000340_520 Hb_000340_520 Hb_002078_260--Hb_000340_520 Hb_001250_060 Hb_001250_060 Hb_129672_010--Hb_001250_060 Hb_000676_080 Hb_000676_080 Hb_129672_010--Hb_000676_080 Hb_086085_020 Hb_086085_020 Hb_129672_010--Hb_086085_020 Hb_098852_010 Hb_098852_010 Hb_041205_010--Hb_098852_010 Hb_002259_160 Hb_002259_160 Hb_041205_010--Hb_002259_160 Hb_000215_200 Hb_000215_200 Hb_041205_010--Hb_000215_200 Hb_041205_010--Hb_002078_260 Hb_000641_020 Hb_000641_020 Hb_041205_010--Hb_000641_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
84.1776 62.5761 101.655 550.036 84.6373 522.315
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
240.973 373.165 186.178 158.29 138.41

CAGE analysis