Hb_082219_010

Information

Type -
Description -
Location Contig82219: 510-965
Sequence    

Annotation

kegg
ID osa:4332340
description Os03g0264300
nr
ID NP_001049640.2
description Os03g0264300, partial [Oryza sativa Japonica Group]
swissprot
ID Q96VK3
description Serine/threonine-protein kinase bur1 OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) GN=ptkA PE=2 SV=1
trembl
ID Q0DT84
description Os03g0264300 protein (Fragment) OS=Oryza sativa subsp. japonica GN=Os03g0264300 PE=4 SV=2
Gene Ontology
ID GO:0004697
description serine-threonine protein plant-

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_082219_010 0.0 - - Os03g0264300, partial [Oryza sativa Japonica Group]
2 Hb_023024_010 0.0826428458 - - PREDICTED: uncharacterized protein LOC105767094 [Gossypium raimondii]
3 Hb_010531_060 0.1280381303 - - hypothetical protein B456_010G209400, partial [Gossypium raimondii]
4 Hb_005269_010 0.1814194691 - - -
5 Hb_002269_010 0.2120109678 - - PREDICTED: WAT1-related protein At4g15540-like [Jatropha curcas]
6 Hb_001703_100 0.2185535342 - - PREDICTED: uncharacterized protein LOC104885230 [Beta vulgaris subsp. vulgaris]
7 Hb_001529_030 0.2216362876 - - hypothetical protein PRUPE_ppa024472mg, partial [Prunus persica]
8 Hb_002641_100 0.222819031 - - PREDICTED: uncharacterized protein LOC105115446 [Populus euphratica]
9 Hb_003973_050 0.2261580669 - - PREDICTED: 1-aminocyclopropane-1-carboxylate synthase 3-like isoform X1 [Populus euphratica]
10 Hb_123056_010 0.2513900537 - - -
11 Hb_001277_140 0.257609898 - - PREDICTED: plasma membrane calcium-transporting ATPase 2-like [Takifugu rubripes]
12 Hb_004352_020 0.277039367 - - o-methyltransferase, putative [Ricinus communis]
13 Hb_005050_010 0.2795639213 - - hypothetical protein JCGZ_04974 [Jatropha curcas]
14 Hb_004607_130 0.2812570808 - - -
15 Hb_172864_010 0.2817548717 - - PREDICTED: 3'-hydroxy-N-methyl-(S)-coclaurine 4'-O-methyltransferase-like [Jatropha curcas]
16 Hb_000979_270 0.2818420846 - - PREDICTED: MLP-like protein 31 [Jatropha curcas]
17 Hb_000004_150 0.2822239735 - - hypothetical protein RCOM_1382630 [Ricinus communis]
18 Hb_000007_170 0.2822239735 - - PREDICTED: H/ACA ribonucleoprotein complex subunit 2-like protein [Nelumbo nucifera]
19 Hb_000010_280 0.2822239735 - - hypothetical protein JCGZ_13805 [Jatropha curcas]
20 Hb_000022_220 0.2822239735 - - PREDICTED: potassium channel KAT3 [Jatropha curcas]

Gene co-expression network

sample Hb_082219_010 Hb_082219_010 Hb_023024_010 Hb_023024_010 Hb_082219_010--Hb_023024_010 Hb_010531_060 Hb_010531_060 Hb_082219_010--Hb_010531_060 Hb_005269_010 Hb_005269_010 Hb_082219_010--Hb_005269_010 Hb_002269_010 Hb_002269_010 Hb_082219_010--Hb_002269_010 Hb_001703_100 Hb_001703_100 Hb_082219_010--Hb_001703_100 Hb_001529_030 Hb_001529_030 Hb_082219_010--Hb_001529_030 Hb_023024_010--Hb_010531_060 Hb_023024_010--Hb_005269_010 Hb_023024_010--Hb_002269_010 Hb_023024_010--Hb_001703_100 Hb_123056_010 Hb_123056_010 Hb_023024_010--Hb_123056_010 Hb_010531_060--Hb_005269_010 Hb_010531_060--Hb_002269_010 Hb_010531_060--Hb_001703_100 Hb_010531_060--Hb_123056_010 Hb_005269_010--Hb_002269_010 Hb_005269_010--Hb_001703_100 Hb_005269_010--Hb_123056_010 Hb_007586_010 Hb_007586_010 Hb_005269_010--Hb_007586_010 Hb_002269_010--Hb_001703_100 Hb_002269_010--Hb_123056_010 Hb_002269_010--Hb_007586_010 Hb_001703_100--Hb_123056_010 Hb_001703_100--Hb_007586_010 Hb_000894_050 Hb_000894_050 Hb_001703_100--Hb_000894_050 Hb_001277_140 Hb_001277_140 Hb_001529_030--Hb_001277_140 Hb_000813_080 Hb_000813_080 Hb_001529_030--Hb_000813_080 Hb_012760_180 Hb_012760_180 Hb_001529_030--Hb_012760_180 Hb_152764_010 Hb_152764_010 Hb_001529_030--Hb_152764_010 Hb_001529_030--Hb_023024_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.02657 28.3811 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis