Hb_082609_010

Information

Type -
Description -
Location Contig82609: 8303-9036
Sequence    

Annotation

kegg
ID pop:POPTR_0002s25170g
description POPTRDRAFT_553241; YGGT family protein
nr
ID XP_012084994.1
description PREDICTED: uncharacterized protein LOC105644299 [Jatropha curcas]
swissprot
ID O78424
description Uncharacterized protein ycf19 OS=Guillardia theta GN=ycf19 PE=3 SV=1
trembl
ID A0A067L9Z0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_15121 PE=4 SV=1
Gene Ontology
ID GO:0009941
description yggt family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_082609_010 0.0 - - PREDICTED: uncharacterized protein LOC105644299 [Jatropha curcas]
2 Hb_027654_060 0.0670675553 - - RecName: Full=Probable pyridoxal 5'-phosphate synthase subunit PDX1; Short=PLP synthase subunit PDX1; AltName: Full=Ethylene-inducible protein HEVER [Hevea brasiliensis]
3 Hb_000352_270 0.0809485867 - - PREDICTED: pentatricopeptide repeat-containing protein At3g26630, chloroplastic-like [Jatropha curcas]
4 Hb_000614_220 0.0843160219 - - PREDICTED: uncharacterized protein LOC105644756 [Jatropha curcas]
5 Hb_003020_220 0.0853705087 - - PREDICTED: pentatricopeptide repeat-containing protein At3g46790, chloroplastic [Jatropha curcas]
6 Hb_001898_160 0.0922099683 - - hypothetical protein POPTR_0004s23390g [Populus trichocarpa]
7 Hb_103118_010 0.0951548396 - - PREDICTED: uncharacterized protein LOC105643231 [Jatropha curcas]
8 Hb_012675_050 0.1017847951 - - conserved hypothetical protein [Ricinus communis]
9 Hb_000046_050 0.1022021244 - - PREDICTED: LEC14B homolog [Jatropha curcas]
10 Hb_002799_110 0.1050221708 - - PREDICTED: probable protein phosphatase 2C 60 [Jatropha curcas]
11 Hb_011909_100 0.1051759431 - - conserved hypothetical protein [Ricinus communis]
12 Hb_000861_020 0.105739681 transcription factor TF Family: mTERF PREDICTED: uncharacterized protein LOC105631286 [Jatropha curcas]
13 Hb_018133_090 0.1073060234 - - conserved hypothetical protein [Ricinus communis]
14 Hb_000270_260 0.1073171912 - - PREDICTED: uncharacterized protein LOC105640466 [Jatropha curcas]
15 Hb_005237_050 0.1078350512 transcription factor TF Family: C2H2 PREDICTED: uncharacterized protein LOC105630924 [Jatropha curcas]
16 Hb_086639_040 0.1133731956 - - PREDICTED: phosphatidylinositol 4-kinase gamma 7-like [Jatropha curcas]
17 Hb_015941_020 0.1141234498 - - -
18 Hb_000510_290 0.1141698545 - - PREDICTED: protein OSB2, chloroplastic-like isoform X2 [Jatropha curcas]
19 Hb_000160_300 0.1150248903 - - hypothetical protein POPTR_0004s08720g [Populus trichocarpa]
20 Hb_026549_040 0.1158219223 - - PREDICTED: protein SLOW GREEN 1, chloroplastic [Jatropha curcas]

Gene co-expression network

sample Hb_082609_010 Hb_082609_010 Hb_027654_060 Hb_027654_060 Hb_082609_010--Hb_027654_060 Hb_000352_270 Hb_000352_270 Hb_082609_010--Hb_000352_270 Hb_000614_220 Hb_000614_220 Hb_082609_010--Hb_000614_220 Hb_003020_220 Hb_003020_220 Hb_082609_010--Hb_003020_220 Hb_001898_160 Hb_001898_160 Hb_082609_010--Hb_001898_160 Hb_103118_010 Hb_103118_010 Hb_082609_010--Hb_103118_010 Hb_027654_060--Hb_000614_220 Hb_002799_110 Hb_002799_110 Hb_027654_060--Hb_002799_110 Hb_000962_040 Hb_000962_040 Hb_027654_060--Hb_000962_040 Hb_027654_060--Hb_003020_220 Hb_028486_030 Hb_028486_030 Hb_027654_060--Hb_028486_030 Hb_000352_270--Hb_003020_220 Hb_007317_200 Hb_007317_200 Hb_000352_270--Hb_007317_200 Hb_002725_120 Hb_002725_120 Hb_000352_270--Hb_002725_120 Hb_000352_270--Hb_000614_220 Hb_001318_270 Hb_001318_270 Hb_000352_270--Hb_001318_270 Hb_000614_220--Hb_002799_110 Hb_000614_160 Hb_000614_160 Hb_000614_220--Hb_000614_160 Hb_000510_290 Hb_000510_290 Hb_000614_220--Hb_000510_290 Hb_012675_050 Hb_012675_050 Hb_000614_220--Hb_012675_050 Hb_012114_070 Hb_012114_070 Hb_000614_220--Hb_012114_070 Hb_079312_010 Hb_079312_010 Hb_003020_220--Hb_079312_010 Hb_002988_040 Hb_002988_040 Hb_003020_220--Hb_002988_040 Hb_005237_050 Hb_005237_050 Hb_003020_220--Hb_005237_050 Hb_003020_220--Hb_000510_290 Hb_000047_030 Hb_000047_030 Hb_001898_160--Hb_000047_030 Hb_000236_070 Hb_000236_070 Hb_001898_160--Hb_000236_070 Hb_000143_030 Hb_000143_030 Hb_001898_160--Hb_000143_030 Hb_011909_100 Hb_011909_100 Hb_001898_160--Hb_011909_100 Hb_015198_020 Hb_015198_020 Hb_001898_160--Hb_015198_020 Hb_000061_210 Hb_000061_210 Hb_103118_010--Hb_000061_210 Hb_103118_010--Hb_012675_050 Hb_000861_020 Hb_000861_020 Hb_103118_010--Hb_000861_020 Hb_003688_150 Hb_003688_150 Hb_103118_010--Hb_003688_150 Hb_002408_020 Hb_002408_020 Hb_103118_010--Hb_002408_020 Hb_000046_050 Hb_000046_050 Hb_103118_010--Hb_000046_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
14.012 6.85206 8.1635 4.37604 8.57779 13.9641
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
14.9309 24.27 21.1808 8.22062 22.2428

CAGE analysis