Hb_082609_020

Information

Type -
Description -
Location Contig82609: 10787-14711
Sequence    

Annotation

kegg
ID rcu:RCOM_1626560
description hypothetical protein
nr
ID XP_002527247.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID Q6P7N4
description Embryonic stem cell-specific 5-hydroxymethylcytosine-binding protein OS=Xenopus tropicalis GN=hmces PE=2 SV=1
trembl
ID B9SMM8
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1626560 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_59722: 10999-11729 , PASA_asmbl_59723: 11946-12234 , PASA_asmbl_59724: 12886-14715
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_082609_020 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_000418_100 0.0720164103 - - PREDICTED: F-box protein SKIP19-like [Gossypium raimondii]
3 Hb_001584_330 0.0752301296 - - PREDICTED: shaggy-related protein kinase alpha [Jatropha curcas]
4 Hb_003777_330 0.075402858 - - ribonucleoside-diphosphate reductase large chain, putative [Ricinus communis]
5 Hb_012634_010 0.0774829029 - - PREDICTED: uncharacterized protein LOC105110292 [Populus euphratica]
6 Hb_009838_100 0.0792070643 - - hypothetical protein RCOM_1217340 [Ricinus communis]
7 Hb_000062_240 0.0809842832 - - PREDICTED: signal recognition particle subunit SRP72 [Jatropha curcas]
8 Hb_006400_040 0.0865936479 - - PREDICTED: uncharacterized protein LOC105642527 [Jatropha curcas]
9 Hb_000923_020 0.0874861528 - - PREDICTED: ankyrin repeat domain-containing protein 65-like [Jatropha curcas]
10 Hb_000853_110 0.087614338 - - PREDICTED: 60S ribosomal protein L19-1 [Jatropha curcas]
11 Hb_003728_030 0.0882180532 - - o-sialoglycoprotein endopeptidase, putative [Ricinus communis]
12 Hb_004223_090 0.0896330438 transcription factor TF Family: E2F-DP PREDICTED: transcription factor E2FC isoform X2 [Jatropha curcas]
13 Hb_001720_050 0.0901207635 - - PREDICTED: ATPase family AAA domain-containing protein At1g05910 isoform X1 [Jatropha curcas]
14 Hb_000116_480 0.0904986748 - - PREDICTED: MORC family CW-type zinc finger protein 3-like [Jatropha curcas]
15 Hb_001030_120 0.090943587 - - PREDICTED: tyrosine--tRNA ligase, cytoplasmic-like [Jatropha curcas]
16 Hb_000059_210 0.0909476772 - - conserved hypothetical protein [Ricinus communis]
17 Hb_001604_010 0.0925399905 - - 14-3-3 protein, putative [Ricinus communis]
18 Hb_001252_080 0.0925457695 - - PREDICTED: eukaryotic translation initiation factor 3 subunit G-like [Jatropha curcas]
19 Hb_028639_060 0.0939317358 - - transporter, putative [Ricinus communis]
20 Hb_000032_570 0.0942945618 transcription factor TF Family: Coactivator p15 PREDICTED: RNA polymerase II transcriptional coactivator KELP [Jatropha curcas]

Gene co-expression network

sample Hb_082609_020 Hb_082609_020 Hb_000418_100 Hb_000418_100 Hb_082609_020--Hb_000418_100 Hb_001584_330 Hb_001584_330 Hb_082609_020--Hb_001584_330 Hb_003777_330 Hb_003777_330 Hb_082609_020--Hb_003777_330 Hb_012634_010 Hb_012634_010 Hb_082609_020--Hb_012634_010 Hb_009838_100 Hb_009838_100 Hb_082609_020--Hb_009838_100 Hb_000062_240 Hb_000062_240 Hb_082609_020--Hb_000062_240 Hb_001720_050 Hb_001720_050 Hb_000418_100--Hb_001720_050 Hb_000418_100--Hb_000062_240 Hb_001030_120 Hb_001030_120 Hb_000418_100--Hb_001030_120 Hb_182026_020 Hb_182026_020 Hb_000418_100--Hb_182026_020 Hb_002609_110 Hb_002609_110 Hb_000418_100--Hb_002609_110 Hb_001623_420 Hb_001623_420 Hb_001584_330--Hb_001623_420 Hb_005306_110 Hb_005306_110 Hb_001584_330--Hb_005306_110 Hb_004812_010 Hb_004812_010 Hb_001584_330--Hb_004812_010 Hb_006400_040 Hb_006400_040 Hb_001584_330--Hb_006400_040 Hb_000120_950 Hb_000120_950 Hb_001584_330--Hb_000120_950 Hb_000139_410 Hb_000139_410 Hb_001584_330--Hb_000139_410 Hb_003777_330--Hb_001720_050 Hb_000923_020 Hb_000923_020 Hb_003777_330--Hb_000923_020 Hb_181235_010 Hb_181235_010 Hb_003777_330--Hb_181235_010 Hb_004195_160 Hb_004195_160 Hb_003777_330--Hb_004195_160 Hb_000224_170 Hb_000224_170 Hb_003777_330--Hb_000224_170 Hb_001790_020 Hb_001790_020 Hb_012634_010--Hb_001790_020 Hb_002026_100 Hb_002026_100 Hb_012634_010--Hb_002026_100 Hb_002027_260 Hb_002027_260 Hb_012634_010--Hb_002027_260 Hb_001571_040 Hb_001571_040 Hb_012634_010--Hb_001571_040 Hb_012634_010--Hb_006400_040 Hb_000331_210 Hb_000331_210 Hb_009838_100--Hb_000331_210 Hb_000179_130 Hb_000179_130 Hb_009838_100--Hb_000179_130 Hb_000009_170 Hb_000009_170 Hb_009838_100--Hb_000009_170 Hb_009838_100--Hb_000062_240 Hb_009838_100--Hb_000418_100 Hb_004837_040 Hb_004837_040 Hb_000062_240--Hb_004837_040 Hb_001789_090 Hb_001789_090 Hb_000062_240--Hb_001789_090 Hb_002811_360 Hb_002811_360 Hb_000062_240--Hb_002811_360 Hb_000291_110 Hb_000291_110 Hb_000062_240--Hb_000291_110 Hb_015306_020 Hb_015306_020 Hb_000062_240--Hb_015306_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
25.2393 12.9905 5.73862 6.38762 29.3951 25.6892
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
21.8621 18.7241 22.7294 17.3884 3.00359

CAGE analysis