Hb_082683_010

Information

Type -
Description -
Location Contig82683: 1429-12088
Sequence    

Annotation

kegg
ID bvg:104898613
description uncharacterized LOC104898613
nr
ID XP_010684010.1
description PREDICTED: uncharacterized protein LOC104898613 [Beta vulgaris subsp. vulgaris]
swissprot
ID -
description -
trembl
ID M1BPI1
description Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400019390 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_59727: 8316-10492 , PASA_asmbl_59729: 11006-12321
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_082683_010 0.0 - - PREDICTED: uncharacterized protein LOC104898613 [Beta vulgaris subsp. vulgaris]
2 Hb_002420_010 0.101979659 - - PREDICTED: uncharacterized protein LOC105124982 [Populus euphratica]
3 Hb_001268_300 0.1075489164 - - conserved hypothetical protein [Ricinus communis]
4 Hb_000816_020 0.1083010072 desease resistance Gene Name: NB-ARC unnamed protein product [Coffea canephora]
5 Hb_000527_140 0.1197945746 transcription factor TF Family: GRAS Chitin-inducible gibberellin-responsive protein, putative [Ricinus communis]
6 Hb_002003_040 0.1214028668 - - PREDICTED: probably inactive leucine-rich repeat receptor-like protein kinase At5g48380 isoform X1 [Jatropha curcas]
7 Hb_001677_230 0.1271134954 desease resistance Gene Name: NB-ARC conserved hypothetical protein [Ricinus communis]
8 Hb_000215_250 0.1281101542 - - Acid phosphatase 1 precursor, putative [Ricinus communis]
9 Hb_000811_010 0.1317191687 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor ERF118 [Jatropha curcas]
10 Hb_006594_060 0.1339206831 transcription factor TF Family: HSF PREDICTED: heat shock factor protein HSF24 [Jatropha curcas]
11 Hb_002811_020 0.1349025454 - - Cysteine synthase [Morus notabilis]
12 Hb_032717_010 0.1353827779 - - unnamed protein product [Vitis vinifera]
13 Hb_002217_200 0.1373011155 - - PREDICTED: gibberellin 2-beta-dioxygenase 2 [Jatropha curcas]
14 Hb_002888_060 0.1378714532 - - PREDICTED: phospholipase SGR2 isoform X1 [Jatropha curcas]
15 Hb_001008_110 0.146662565 - - -
16 Hb_042202_020 0.1481684619 - - Eukaryotic release factor 1-3 isoform 1 [Theobroma cacao]
17 Hb_000261_320 0.1487617383 desease resistance Gene Name: NB-ARC leucine-rich repeat-containing protein, putative [Ricinus communis]
18 Hb_001307_200 0.1496796941 - - PREDICTED: uncharacterized protein LOC105644489 [Jatropha curcas]
19 Hb_033594_100 0.150193107 transcription factor TF Family: GNAT PREDICTED: probable amino-acid acetyltransferase NAGS1, chloroplastic isoform X1 [Jatropha curcas]
20 Hb_000417_280 0.1502486082 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_082683_010 Hb_082683_010 Hb_002420_010 Hb_002420_010 Hb_082683_010--Hb_002420_010 Hb_001268_300 Hb_001268_300 Hb_082683_010--Hb_001268_300 Hb_000816_020 Hb_000816_020 Hb_082683_010--Hb_000816_020 Hb_000527_140 Hb_000527_140 Hb_082683_010--Hb_000527_140 Hb_002003_040 Hb_002003_040 Hb_082683_010--Hb_002003_040 Hb_001677_230 Hb_001677_230 Hb_082683_010--Hb_001677_230 Hb_002420_010--Hb_002003_040 Hb_000215_250 Hb_000215_250 Hb_002420_010--Hb_000215_250 Hb_007943_020 Hb_007943_020 Hb_002420_010--Hb_007943_020 Hb_000264_340 Hb_000264_340 Hb_002420_010--Hb_000264_340 Hb_000793_040 Hb_000793_040 Hb_002420_010--Hb_000793_040 Hb_003517_100 Hb_003517_100 Hb_001268_300--Hb_003517_100 Hb_000417_280 Hb_000417_280 Hb_001268_300--Hb_000417_280 Hb_042202_020 Hb_042202_020 Hb_001268_300--Hb_042202_020 Hb_009193_060 Hb_009193_060 Hb_001268_300--Hb_009193_060 Hb_073973_020 Hb_073973_020 Hb_001268_300--Hb_073973_020 Hb_006096_020 Hb_006096_020 Hb_000816_020--Hb_006096_020 Hb_000816_020--Hb_001677_230 Hb_000816_020--Hb_002420_010 Hb_033594_100 Hb_033594_100 Hb_000816_020--Hb_033594_100 Hb_000811_010 Hb_000811_010 Hb_000816_020--Hb_000811_010 Hb_114684_010 Hb_114684_010 Hb_000527_140--Hb_114684_010 Hb_064985_010 Hb_064985_010 Hb_000527_140--Hb_064985_010 Hb_002660_040 Hb_002660_040 Hb_000527_140--Hb_002660_040 Hb_000527_140--Hb_042202_020 Hb_001008_110 Hb_001008_110 Hb_000527_140--Hb_001008_110 Hb_000847_020 Hb_000847_020 Hb_000527_140--Hb_000847_020 Hb_002671_060 Hb_002671_060 Hb_002003_040--Hb_002671_060 Hb_000261_320 Hb_000261_320 Hb_002003_040--Hb_000261_320 Hb_002833_020 Hb_002833_020 Hb_002003_040--Hb_002833_020 Hb_002003_040--Hb_001008_110 Hb_002888_060 Hb_002888_060 Hb_001677_230--Hb_002888_060 Hb_001619_010 Hb_001619_010 Hb_001677_230--Hb_001619_010 Hb_001963_110 Hb_001963_110 Hb_001677_230--Hb_001963_110 Hb_001677_230--Hb_006096_020 Hb_001677_230--Hb_033594_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.475217 10.1729 4.09501 6.03892 0.28409 0.786839
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.454922 0.556853 0.505959 16.7952 9.81695

CAGE analysis