Hb_082793_010

Information

Type -
Description -
Location Contig82793: 220-6853
Sequence    

Annotation

kegg
ID rcu:RCOM_1494400
description serine-threonine protein kinase, plant-type, putative (EC:2.7.11.13)
nr
ID XP_002516046.1
description serine-threonine protein kinase, plant-type, putative [Ricinus communis]
swissprot
ID Q9LV48
description Proline-rich receptor-like protein kinase PERK1 OS=Arabidopsis thaliana GN=PERK1 PE=2 SV=1
trembl
ID B9RQM7
description Serine-threonine protein kinase, plant-type, putative OS=Ricinus communis GN=RCOM_1494400 PE=3 SV=1
Gene Ontology
ID GO:0004672
description proline-rich receptor-like protein kinase perk1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_59748: 2652-3444
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_082793_010 0.0 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
2 Hb_163975_010 0.1091243126 - - PREDICTED: histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH4 isoform X3 [Jatropha curcas]
3 Hb_002748_020 0.1634291279 - - transducin family protein [Populus trichocarpa]
4 Hb_004411_060 0.1661595613 - - acetolactate synthase, putative [Ricinus communis]
5 Hb_084670_010 0.1694819637 - - PREDICTED: thiamine biosynthetic bifunctional enzyme TH1, chloroplastic isoform X1 [Jatropha curcas]
6 Hb_012678_010 0.1756354781 - - PREDICTED: outer envelope protein 61-like [Gossypium raimondii]
7 Hb_002908_060 0.1765074071 - - unnamed protein product, partial [Coffea canephora]
8 Hb_003747_020 0.1801429809 - - PREDICTED: acetyl-coenzyme A synthetase, chloroplastic/glyoxysomal isoform X1 [Jatropha curcas]
9 Hb_000019_200 0.1826944322 - - PREDICTED: histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH4 isoform X3 [Jatropha curcas]
10 Hb_000896_050 0.1836047495 - - PREDICTED: uncharacterized protein LOC105637668 [Jatropha curcas]
11 Hb_055062_040 0.1838681218 - - ceramidase, putative [Ricinus communis]
12 Hb_142343_010 0.1843319939 - - ATP binding protein, putative [Ricinus communis]
13 Hb_000203_260 0.1847290085 - - PREDICTED: microtubule-associated protein 70-2-like [Jatropha curcas]
14 Hb_006274_050 0.1869054485 - - hypothetical protein VITISV_022618 [Vitis vinifera]
15 Hb_002748_030 0.1872063803 - - nucleotide binding protein, putative [Ricinus communis]
16 Hb_127552_060 0.1882924107 transcription factor TF Family: SWI/SNF-BAF60b protein binding protein, putative [Ricinus communis]
17 Hb_012393_030 0.1906548717 - - NADP-dependent isocitrate dehydrogenase family protein [Populus trichocarpa]
18 Hb_000922_030 0.1910383991 - - PREDICTED: protein EXECUTER 2, chloroplastic [Jatropha curcas]
19 Hb_007558_100 0.1917207501 - - PREDICTED: uncharacterized protein LOC105649092 isoform X2 [Jatropha curcas]
20 Hb_098315_080 0.1943039895 - - methylmalonate-semialdehyde dehydrogenase, putative [Ricinus communis]

Gene co-expression network

sample Hb_082793_010 Hb_082793_010 Hb_163975_010 Hb_163975_010 Hb_082793_010--Hb_163975_010 Hb_002748_020 Hb_002748_020 Hb_082793_010--Hb_002748_020 Hb_004411_060 Hb_004411_060 Hb_082793_010--Hb_004411_060 Hb_084670_010 Hb_084670_010 Hb_082793_010--Hb_084670_010 Hb_012678_010 Hb_012678_010 Hb_082793_010--Hb_012678_010 Hb_002908_060 Hb_002908_060 Hb_082793_010--Hb_002908_060 Hb_142343_010 Hb_142343_010 Hb_163975_010--Hb_142343_010 Hb_163975_010--Hb_002748_020 Hb_163975_010--Hb_084670_010 Hb_163975_010--Hb_002908_060 Hb_000053_060 Hb_000053_060 Hb_163975_010--Hb_000053_060 Hb_001629_030 Hb_001629_030 Hb_002748_020--Hb_001629_030 Hb_000019_200 Hb_000019_200 Hb_002748_020--Hb_000019_200 Hb_005601_040 Hb_005601_040 Hb_002748_020--Hb_005601_040 Hb_000095_080 Hb_000095_080 Hb_002748_020--Hb_000095_080 Hb_000656_010 Hb_000656_010 Hb_002748_020--Hb_000656_010 Hb_006275_070 Hb_006275_070 Hb_002748_020--Hb_006275_070 Hb_098315_080 Hb_098315_080 Hb_004411_060--Hb_098315_080 Hb_164898_010 Hb_164898_010 Hb_004411_060--Hb_164898_010 Hb_006909_010 Hb_006909_010 Hb_004411_060--Hb_006909_010 Hb_002005_100 Hb_002005_100 Hb_004411_060--Hb_002005_100 Hb_025193_040 Hb_025193_040 Hb_004411_060--Hb_025193_040 Hb_003747_020 Hb_003747_020 Hb_004411_060--Hb_003747_020 Hb_055062_040 Hb_055062_040 Hb_084670_010--Hb_055062_040 Hb_000358_050 Hb_000358_050 Hb_084670_010--Hb_000358_050 Hb_011537_060 Hb_011537_060 Hb_084670_010--Hb_011537_060 Hb_001159_010 Hb_001159_010 Hb_084670_010--Hb_001159_010 Hb_007558_100 Hb_007558_100 Hb_084670_010--Hb_007558_100 Hb_016347_010 Hb_016347_010 Hb_084670_010--Hb_016347_010 Hb_003780_020 Hb_003780_020 Hb_012678_010--Hb_003780_020 Hb_012678_020 Hb_012678_020 Hb_012678_010--Hb_012678_020 Hb_012678_010--Hb_007558_100 Hb_000784_070 Hb_000784_070 Hb_012678_010--Hb_000784_070 Hb_138475_010 Hb_138475_010 Hb_012678_010--Hb_138475_010 Hb_000586_030 Hb_000586_030 Hb_012678_010--Hb_000586_030 Hb_000950_010 Hb_000950_010 Hb_002908_060--Hb_000950_010 Hb_002908_060--Hb_000053_060 Hb_001673_100 Hb_001673_100 Hb_002908_060--Hb_001673_100 Hb_004870_040 Hb_004870_040 Hb_002908_060--Hb_004870_040 Hb_007383_020 Hb_007383_020 Hb_002908_060--Hb_007383_020 Hb_003098_080 Hb_003098_080 Hb_002908_060--Hb_003098_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.375818 0.369864 1.45958 1.37323 0.438356 2.51352
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.652991 0.865181 1.72133 3.72773 2.81784

CAGE analysis