Hb_082821_010

Information

Type -
Description -
Location Contig82821: 106-731
Sequence    

Annotation

kegg
ID pop:POPTR_0010s21390g
description POPTRDRAFT_805521; hypothetical protein
nr
ID XP_012082718.1
description PREDICTED: dephospho-CoA kinase-like [Jatropha curcas]
swissprot
ID Q9ZQH0
description Dephospho-CoA kinase OS=Arabidopsis thaliana GN=COAE PE=2 SV=1
trembl
ID A0A067JVY4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_13897 PE=3 SV=1
Gene Ontology
ID GO:0004140
description dephospho- kinase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_59752: 482-895
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_082821_010 0.0 - - PREDICTED: dephospho-CoA kinase-like [Jatropha curcas]
2 Hb_001633_130 0.0385939703 - - PREDICTED: uncharacterized protein LOC105630200 [Jatropha curcas]
3 Hb_090051_030 0.0504884812 - - PREDICTED: heterogeneous nuclear ribonucleoprotein 1 [Jatropha curcas]
4 Hb_006455_120 0.0731254952 - - n6-DNA-methyltransferase, putative [Ricinus communis]
5 Hb_007904_200 0.0774117141 - - protein binding protein, putative [Ricinus communis]
6 Hb_002863_050 0.0776480877 - - aldose 1-epimerase, putative [Ricinus communis]
7 Hb_002235_250 0.0787520043 - - PREDICTED: cystathionine gamma-synthase 1, chloroplastic [Jatropha curcas]
8 Hb_000146_050 0.0799329043 - - PREDICTED: protein unc-50 homolog isoform X2 [Gossypium raimondii]
9 Hb_033642_030 0.0816284413 - - PREDICTED: G-protein coupled receptor 1 isoform X1 [Jatropha curcas]
10 Hb_000010_330 0.0818284941 - - PREDICTED: probable Ufm1-specific protease [Jatropha curcas]
11 Hb_000594_050 0.0848283452 - - PREDICTED: pH-response regulator protein palA/RIM20 isoform X1 [Jatropha curcas]
12 Hb_005144_160 0.0851384161 - - PREDICTED: uncharacterized protein LOC105628018 isoform X1 [Jatropha curcas]
13 Hb_003964_070 0.0866994548 - - hypothetical protein JCGZ_15695 [Jatropha curcas]
14 Hb_001135_060 0.0869561469 - - PREDICTED: probable protein phosphatase 2C 38 [Jatropha curcas]
15 Hb_003665_060 0.087078952 - - PREDICTED: protein N-lysine methyltransferase METTL21A [Jatropha curcas]
16 Hb_000451_010 0.0884333345 - - secretory carrier membrane protein, putative [Ricinus communis]
17 Hb_001252_130 0.0904515384 - - PREDICTED: protein YIPF1 homolog [Jatropha curcas]
18 Hb_019280_030 0.0912735128 - - -
19 Hb_005291_050 0.0914074009 - - PREDICTED: mannan endo-1,4-beta-mannosidase 6-like isoform X1 [Jatropha curcas]
20 Hb_007441_190 0.0921171391 - - hypothetical protein CISIN_1g023046mg [Citrus sinensis]

Gene co-expression network

sample Hb_082821_010 Hb_082821_010 Hb_001633_130 Hb_001633_130 Hb_082821_010--Hb_001633_130 Hb_090051_030 Hb_090051_030 Hb_082821_010--Hb_090051_030 Hb_006455_120 Hb_006455_120 Hb_082821_010--Hb_006455_120 Hb_007904_200 Hb_007904_200 Hb_082821_010--Hb_007904_200 Hb_002863_050 Hb_002863_050 Hb_082821_010--Hb_002863_050 Hb_002235_250 Hb_002235_250 Hb_082821_010--Hb_002235_250 Hb_001633_130--Hb_090051_030 Hb_000146_050 Hb_000146_050 Hb_001633_130--Hb_000146_050 Hb_001633_130--Hb_006455_120 Hb_001159_130 Hb_001159_130 Hb_001633_130--Hb_001159_130 Hb_003177_030 Hb_003177_030 Hb_001633_130--Hb_003177_030 Hb_090051_030--Hb_000146_050 Hb_005023_010 Hb_005023_010 Hb_090051_030--Hb_005023_010 Hb_033642_030 Hb_033642_030 Hb_090051_030--Hb_033642_030 Hb_090051_030--Hb_006455_120 Hb_006634_070 Hb_006634_070 Hb_006455_120--Hb_006634_070 Hb_011037_030 Hb_011037_030 Hb_006455_120--Hb_011037_030 Hb_000300_500 Hb_000300_500 Hb_006455_120--Hb_000300_500 Hb_000603_150 Hb_000603_150 Hb_006455_120--Hb_000603_150 Hb_000580_180 Hb_000580_180 Hb_006455_120--Hb_000580_180 Hb_000156_010 Hb_000156_010 Hb_006455_120--Hb_000156_010 Hb_000010_330 Hb_000010_330 Hb_007904_200--Hb_000010_330 Hb_010457_030 Hb_010457_030 Hb_007904_200--Hb_010457_030 Hb_000451_010 Hb_000451_010 Hb_007904_200--Hb_000451_010 Hb_000125_130 Hb_000125_130 Hb_007904_200--Hb_000125_130 Hb_003195_070 Hb_003195_070 Hb_007904_200--Hb_003195_070 Hb_001047_030 Hb_001047_030 Hb_007904_200--Hb_001047_030 Hb_005496_140 Hb_005496_140 Hb_002863_050--Hb_005496_140 Hb_002863_050--Hb_000580_180 Hb_005144_160 Hb_005144_160 Hb_002863_050--Hb_005144_160 Hb_001142_030 Hb_001142_030 Hb_002863_050--Hb_001142_030 Hb_003416_010 Hb_003416_010 Hb_002863_050--Hb_003416_010 Hb_000416_040 Hb_000416_040 Hb_002863_050--Hb_000416_040 Hb_002235_250--Hb_005496_140 Hb_000331_260 Hb_000331_260 Hb_002235_250--Hb_000331_260 Hb_001971_010 Hb_001971_010 Hb_002235_250--Hb_001971_010 Hb_000883_020 Hb_000883_020 Hb_002235_250--Hb_000883_020 Hb_000866_010 Hb_000866_010 Hb_002235_250--Hb_000866_010 Hb_000375_350 Hb_000375_350 Hb_002235_250--Hb_000375_350
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
15.1794 8.51435 15.8875 21.5219 18.473 22.9911
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
13.6408 17.8633 18.8931 8.89615 13.2017

CAGE analysis