Hb_083078_010

Information

Type -
Description -
Location Contig83078: 4120-10353
Sequence    

Annotation

kegg
ID rcu:RCOM_1408100
description Splicing factor, arginine/serine-rich, putative
nr
ID XP_002523584.1
description Splicing factor, arginine/serine-rich, putative [Ricinus communis]
swissprot
ID Q8N2M8
description CLK4-associating serine/arginine rich protein OS=Homo sapiens GN=CLASRP PE=1 SV=4
trembl
ID B9SC65
description Splicing factor, arginine/serine-rich, putative OS=Ricinus communis GN=RCOM_1408100 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_59819: 4230-9729 , PASA_asmbl_59820: 4161-9729 , PASA_asmbl_59821: 4230-9690 , PASA_asmbl_59822: 4230-9690
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_083078_010 0.0 - - Splicing factor, arginine/serine-rich, putative [Ricinus communis]
2 Hb_007290_070 0.0929296323 - - Monodehydroascorbate reductase family protein [Populus trichocarpa]
3 Hb_115513_040 0.0930209572 - - conserved hypothetical protein [Ricinus communis]
4 Hb_000227_320 0.0954121366 - - unnamed protein product [Vitis vinifera]
5 Hb_001205_180 0.1002928655 - - hypothetical protein POPTR_0005s12580g [Populus trichocarpa]
6 Hb_004096_220 0.1041940288 - - PREDICTED: uncharacterized protein LOC105638706 isoform X1 [Jatropha curcas]
7 Hb_005288_050 0.1048299002 transcription factor TF Family: SET PREDICTED: histone-lysine N-methyltransferase SUVR4 [Jatropha curcas]
8 Hb_006794_020 0.1071426493 - - PREDICTED: uncharacterized protein LOC105645849 isoform X6 [Jatropha curcas]
9 Hb_017914_010 0.112880835 transcription factor TF Family: C2H2 PREDICTED: protein SUPPRESSOR OF FRI 4 [Jatropha curcas]
10 Hb_000094_150 0.1151867891 - - -
11 Hb_143629_020 0.1158698425 - - PREDICTED: uncharacterized protein LOC105647351 [Jatropha curcas]
12 Hb_001408_020 0.117325509 - - PREDICTED: phosphatidylserine decarboxylase proenzyme 2-like [Jatropha curcas]
13 Hb_000665_260 0.1173803905 - - PREDICTED: uncharacterized protein LOC105637620 isoform X1 [Jatropha curcas]
14 Hb_004800_130 0.1184565659 - - hypothetical protein POPTR_0005s12580g [Populus trichocarpa]
15 Hb_000007_410 0.1210476042 - - PREDICTED: proline-rich receptor-like protein kinase PERK9 isoform X2 [Populus euphratica]
16 Hb_003964_110 0.1213636248 - - PREDICTED: pentatricopeptide repeat-containing protein At1g26460, mitochondrial [Jatropha curcas]
17 Hb_000248_100 0.1214552194 - - PREDICTED: NADPH-dependent thioredoxin reductase 3 [Populus euphratica]
18 Hb_001307_200 0.1220282162 - - PREDICTED: uncharacterized protein LOC105644489 [Jatropha curcas]
19 Hb_000072_020 0.1231921264 - - PREDICTED: C2 and GRAM domain-containing protein At1g03370 isoform X2 [Jatropha curcas]
20 Hb_000008_430 0.1241956086 - - PREDICTED: zinc finger CCCH domain-containing protein 24 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_083078_010 Hb_083078_010 Hb_007290_070 Hb_007290_070 Hb_083078_010--Hb_007290_070 Hb_115513_040 Hb_115513_040 Hb_083078_010--Hb_115513_040 Hb_000227_320 Hb_000227_320 Hb_083078_010--Hb_000227_320 Hb_001205_180 Hb_001205_180 Hb_083078_010--Hb_001205_180 Hb_004096_220 Hb_004096_220 Hb_083078_010--Hb_004096_220 Hb_005288_050 Hb_005288_050 Hb_083078_010--Hb_005288_050 Hb_001499_070 Hb_001499_070 Hb_007290_070--Hb_001499_070 Hb_001408_020 Hb_001408_020 Hb_007290_070--Hb_001408_020 Hb_000477_070 Hb_000477_070 Hb_007290_070--Hb_000477_070 Hb_005214_070 Hb_005214_070 Hb_007290_070--Hb_005214_070 Hb_187005_010 Hb_187005_010 Hb_007290_070--Hb_187005_010 Hb_000732_230 Hb_000732_230 Hb_115513_040--Hb_000732_230 Hb_115513_040--Hb_000227_320 Hb_000950_040 Hb_000950_040 Hb_115513_040--Hb_000950_040 Hb_003050_150 Hb_003050_150 Hb_115513_040--Hb_003050_150 Hb_115513_040--Hb_001205_180 Hb_003964_110 Hb_003964_110 Hb_000227_320--Hb_003964_110 Hb_000665_260 Hb_000665_260 Hb_000227_320--Hb_000665_260 Hb_000072_020 Hb_000072_020 Hb_000227_320--Hb_000072_020 Hb_033363_010 Hb_033363_010 Hb_000227_320--Hb_033363_010 Hb_000227_320--Hb_000950_040 Hb_006949_060 Hb_006949_060 Hb_000227_320--Hb_006949_060 Hb_004800_130 Hb_004800_130 Hb_001205_180--Hb_004800_130 Hb_001133_090 Hb_001133_090 Hb_001205_180--Hb_001133_090 Hb_002553_010 Hb_002553_010 Hb_001205_180--Hb_002553_010 Hb_010775_010 Hb_010775_010 Hb_001205_180--Hb_010775_010 Hb_001488_210 Hb_001488_210 Hb_001205_180--Hb_001488_210 Hb_012033_010 Hb_012033_010 Hb_004096_220--Hb_012033_010 Hb_001307_200 Hb_001307_200 Hb_004096_220--Hb_001307_200 Hb_000261_310 Hb_000261_310 Hb_004096_220--Hb_000261_310 Hb_000438_010 Hb_000438_010 Hb_004096_220--Hb_000438_010 Hb_001268_300 Hb_001268_300 Hb_004096_220--Hb_001268_300 Hb_002804_010 Hb_002804_010 Hb_005288_050--Hb_002804_010 Hb_002387_040 Hb_002387_040 Hb_005288_050--Hb_002387_040 Hb_006794_020 Hb_006794_020 Hb_005288_050--Hb_006794_020 Hb_005288_050--Hb_000227_320 Hb_005288_050--Hb_033363_010 Hb_000270_700 Hb_000270_700 Hb_005288_050--Hb_000270_700
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
7.75141 55.357 50.7075 32.2993 11.9189 8.71032
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.55101 6.12237 4.05751 51.5821 40.4007

CAGE analysis