Hb_083493_020

Information

Type desease resistance
Description Gene Name: NB-ARC
Location Contig83493: 9727-10455
Sequence    

Annotation

kegg
ID vvi:100853456
description disease resistance protein At4g27190-like
nr
ID XP_010660268.1
description PREDICTED: disease resistance protein At4g27190-like [Vitis vinifera]
swissprot
ID Q9FG91
description Probable disease resistance protein At5g43730 OS=Arabidopsis thaliana GN=At5g43730 PE=2 SV=1
trembl
ID F6H630
description Putative uncharacterized protein OS=Vitis vinifera GN=VIT_14s0036g00260 PE=4 SV=1
Gene Ontology
ID GO:0043531
description disease resistance protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_083493_020 0.0 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance protein At4g27190-like [Vitis vinifera]
2 Hb_004242_070 0.1380933648 - - putative non-LTR retroelement reverse transcriptase [Arabidopsis thaliana]
3 Hb_001103_040 0.1994839966 - - hypothetical protein POPTR_0013s11170g [Populus trichocarpa]
4 Hb_003442_010 0.2011796985 - - PREDICTED: structural maintenance of chromosomes protein 4-like isoform X2 [Citrus sinensis]
5 Hb_000189_490 0.2067735891 - - Sulfate/thiosulfate import ATP-binding protein cysA [Theobroma cacao]
6 Hb_002400_370 0.2250594033 - - PREDICTED: uncharacterized protein LOC105637607 [Jatropha curcas]
7 Hb_157263_010 0.2264962462 - - PREDICTED: monomethylxanthine methyltransferase 2-like isoform X4 [Jatropha curcas]
8 Hb_027506_050 0.2285537161 - - -
9 Hb_002498_210 0.2329775196 - - SKU5 similar 4 isoform 3 [Theobroma cacao]
10 Hb_116360_010 0.2563627113 - - -
11 Hb_010883_220 0.260164724 - - PREDICTED: flavonol synthase/flavanone 3-hydroxylase-like [Prunus mume]
12 Hb_009913_010 0.2728616691 - - PREDICTED: plasma membrane ATPase 2-like isoform X1 [Jatropha curcas]
13 Hb_136884_010 0.2858797492 - - Disease resistance protein RFL1, putative [Ricinus communis]
14 Hb_183820_010 0.2945390343 - - Disease resistance protein RFL1, putative [Ricinus communis]
15 Hb_001481_020 0.298687822 - - PREDICTED: L-type lectin-domain containing receptor kinase V.9-like [Jatropha curcas]
16 Hb_031954_010 0.2996777931 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
17 Hb_001157_130 0.3026793038 - - PREDICTED: transmembrane protein 45B-like [Jatropha curcas]
18 Hb_000270_550 0.3048125216 - - -
19 Hb_009543_040 0.3051077192 - - -
20 Hb_000575_010 0.3058732398 - - PREDICTED: uncharacterized protein LOC103454030 [Malus domestica]

Gene co-expression network

sample Hb_083493_020 Hb_083493_020 Hb_004242_070 Hb_004242_070 Hb_083493_020--Hb_004242_070 Hb_001103_040 Hb_001103_040 Hb_083493_020--Hb_001103_040 Hb_003442_010 Hb_003442_010 Hb_083493_020--Hb_003442_010 Hb_000189_490 Hb_000189_490 Hb_083493_020--Hb_000189_490 Hb_002400_370 Hb_002400_370 Hb_083493_020--Hb_002400_370 Hb_157263_010 Hb_157263_010 Hb_083493_020--Hb_157263_010 Hb_004242_070--Hb_002400_370 Hb_002498_210 Hb_002498_210 Hb_004242_070--Hb_002498_210 Hb_116360_010 Hb_116360_010 Hb_004242_070--Hb_116360_010 Hb_004242_070--Hb_157263_010 Hb_004242_070--Hb_001103_040 Hb_001103_040--Hb_000189_490 Hb_011382_050 Hb_011382_050 Hb_001103_040--Hb_011382_050 Hb_001103_040--Hb_003442_010 Hb_027506_050 Hb_027506_050 Hb_001103_040--Hb_027506_050 Hb_009913_010 Hb_009913_010 Hb_001103_040--Hb_009913_010 Hb_003442_010--Hb_000189_490 Hb_001481_020 Hb_001481_020 Hb_003442_010--Hb_001481_020 Hb_183820_010 Hb_183820_010 Hb_003442_010--Hb_183820_010 Hb_000365_290 Hb_000365_290 Hb_003442_010--Hb_000365_290 Hb_031954_010 Hb_031954_010 Hb_000189_490--Hb_031954_010 Hb_004341_010 Hb_004341_010 Hb_000189_490--Hb_004341_010 Hb_001283_010 Hb_001283_010 Hb_000189_490--Hb_001283_010 Hb_000189_490--Hb_000365_290 Hb_002400_370--Hb_002498_210 Hb_000184_140 Hb_000184_140 Hb_002400_370--Hb_000184_140 Hb_002400_370--Hb_116360_010 Hb_000624_020 Hb_000624_020 Hb_002400_370--Hb_000624_020 Hb_010175_060 Hb_010175_060 Hb_157263_010--Hb_010175_060 Hb_050241_010 Hb_050241_010 Hb_157263_010--Hb_050241_010 Hb_006588_030 Hb_006588_030 Hb_157263_010--Hb_006588_030 Hb_157263_010--Hb_000189_490 Hb_001493_170 Hb_001493_170 Hb_157263_010--Hb_001493_170 Hb_004122_030 Hb_004122_030 Hb_157263_010--Hb_004122_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0822184 0.11874 0 0.156002 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.122599 0

CAGE analysis