Hb_083641_010

Information

Type -
Description -
Location Contig83641: 1194-1424
Sequence    

Annotation

kegg
ID tcc:TCM_038601
description SECY isoform 1
nr
ID XP_007014008.1
description SECY isoform 1 [Theobroma cacao]
swissprot
ID Q38885
description Preprotein translocase subunit SCY1, chloroplastic OS=Arabidopsis thaliana GN=SCY1 PE=1 SV=2
trembl
ID A0A061GR57
description SECY isoform 1 OS=Theobroma cacao GN=TCM_038601 PE=3 SV=1
Gene Ontology
ID GO:0016021
description preprotein translocase subunit chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_083641_010 0.0 - - SECY isoform 1 [Theobroma cacao]
2 Hb_142328_010 0.1459096971 - - PREDICTED: uncharacterized protein LOC105630513 isoform X1 [Jatropha curcas]
3 Hb_002079_030 0.1524791464 - - PREDICTED: uncharacterized protein At1g32220, chloroplastic [Jatropha curcas]
4 Hb_050912_010 0.1716407212 - - PREDICTED: amidase 1-like isoform X2 [Jatropha curcas]
5 Hb_004724_470 0.1730096124 - - Nitrilase, putative [Ricinus communis]
6 Hb_010998_030 0.1734660743 - - -
7 Hb_005048_140 0.1734687283 - - conserved hypothetical protein [Ricinus communis]
8 Hb_028227_010 0.1750665362 - - PREDICTED: uncharacterized protein LOC105629489 [Jatropha curcas]
9 Hb_000071_150 0.1778690444 - - Stearoy-ACP desaturase [Ricinus communis]
10 Hb_002079_050 0.180044083 - - hypothetical protein B456_004G182300 [Gossypium raimondii]
11 Hb_000069_570 0.1807442949 - - PREDICTED: uncharacterized protein At5g05190-like isoform X1 [Jatropha curcas]
12 Hb_134429_010 0.1809393934 - - conserved hypothetical protein [Ricinus communis]
13 Hb_000203_230 0.1818080126 - - PREDICTED: probable inactive dual specificity protein phosphatase-like At4g18593 [Jatropha curcas]
14 Hb_000347_560 0.1854084124 - - -
15 Hb_002400_330 0.1868097717 - - PREDICTED: ER membrane protein complex subunit 7 homolog isoform X2 [Jatropha curcas]
16 Hb_000010_140 0.1884771354 - - PREDICTED: rhodanese-like domain-containing protein 11, chloroplastic isoform X2 [Jatropha curcas]
17 Hb_051424_010 0.191435197 - - PREDICTED: putative methyltransferase At1g22800 [Jatropha curcas]
18 Hb_008484_010 0.1951650063 - - hypothetical protein B456_008G050700 [Gossypium raimondii]
19 Hb_086765_010 0.1967453844 - - PREDICTED: nitrile-specifier protein 5-like [Jatropha curcas]
20 Hb_001828_040 0.1972272725 - - PREDICTED: F-box protein SKIP14 [Jatropha curcas]

Gene co-expression network

sample Hb_083641_010 Hb_083641_010 Hb_142328_010 Hb_142328_010 Hb_083641_010--Hb_142328_010 Hb_002079_030 Hb_002079_030 Hb_083641_010--Hb_002079_030 Hb_050912_010 Hb_050912_010 Hb_083641_010--Hb_050912_010 Hb_004724_470 Hb_004724_470 Hb_083641_010--Hb_004724_470 Hb_010998_030 Hb_010998_030 Hb_083641_010--Hb_010998_030 Hb_005048_140 Hb_005048_140 Hb_083641_010--Hb_005048_140 Hb_002079_050 Hb_002079_050 Hb_142328_010--Hb_002079_050 Hb_142328_010--Hb_002079_030 Hb_006810_030 Hb_006810_030 Hb_142328_010--Hb_006810_030 Hb_012194_050 Hb_012194_050 Hb_142328_010--Hb_012194_050 Hb_001898_210 Hb_001898_210 Hb_142328_010--Hb_001898_210 Hb_152202_010 Hb_152202_010 Hb_142328_010--Hb_152202_010 Hb_001828_040 Hb_001828_040 Hb_002079_030--Hb_001828_040 Hb_069662_010 Hb_069662_010 Hb_002079_030--Hb_069662_010 Hb_011486_040 Hb_011486_040 Hb_002079_030--Hb_011486_040 Hb_000333_080 Hb_000333_080 Hb_002079_030--Hb_000333_080 Hb_004531_140 Hb_004531_140 Hb_002079_030--Hb_004531_140 Hb_006541_040 Hb_006541_040 Hb_050912_010--Hb_006541_040 Hb_134429_010 Hb_134429_010 Hb_050912_010--Hb_134429_010 Hb_002400_330 Hb_002400_330 Hb_050912_010--Hb_002400_330 Hb_005015_060 Hb_005015_060 Hb_050912_010--Hb_005015_060 Hb_161994_030 Hb_161994_030 Hb_050912_010--Hb_161994_030 Hb_000056_130 Hb_000056_130 Hb_050912_010--Hb_000056_130 Hb_007765_070 Hb_007765_070 Hb_004724_470--Hb_007765_070 Hb_000203_230 Hb_000203_230 Hb_004724_470--Hb_000203_230 Hb_004445_040 Hb_004445_040 Hb_004724_470--Hb_004445_040 Hb_000094_290 Hb_000094_290 Hb_004724_470--Hb_000094_290 Hb_010003_010 Hb_010003_010 Hb_004724_470--Hb_010003_010 Hb_010998_030--Hb_002079_050 Hb_003992_040 Hb_003992_040 Hb_010998_030--Hb_003992_040 Hb_010998_030--Hb_002079_030 Hb_010998_030--Hb_000333_080 Hb_010998_030--Hb_142328_010 Hb_000069_570 Hb_000069_570 Hb_005048_140--Hb_000069_570 Hb_116420_040 Hb_116420_040 Hb_005048_140--Hb_116420_040 Hb_002471_180 Hb_002471_180 Hb_005048_140--Hb_002471_180 Hb_041327_020 Hb_041327_020 Hb_005048_140--Hb_041327_020 Hb_000022_190 Hb_000022_190 Hb_005048_140--Hb_000022_190 Hb_003376_260 Hb_003376_260 Hb_005048_140--Hb_003376_260
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
37.0371 38.7664 74.1411 94.3228 41.247 189.681
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
40.8516 13.6888 18.0132 17.4825 106.272

CAGE analysis