Hb_083663_010

Information

Type -
Description -
Location Contig83663: 2365-4139
Sequence    

Annotation

kegg
ID pda:103715912
description uncharacterized LOC103715912
nr
ID XP_012068505.1
description PREDICTED: uncharacterized protein LOC105631113 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID M5WQG1
description Uncharacterized protein (Fragment) OS=Prunus persica GN=PRUPE_ppa023432mg PE=4 SV=1
Gene Ontology
ID GO:0003676
description PREDICTED: uncharacterized protein LOC105631113

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_083663_010 0.0 - - PREDICTED: uncharacterized protein LOC105631113 [Jatropha curcas]
2 Hb_015778_020 0.1966451519 - - Putative methyltransferase family protein [Solanum demissum]
3 Hb_011280_020 0.2223941873 - - polyprotein [Oryza australiensis]
4 Hb_011344_150 0.2380601115 - - polyprotein [Citrus endogenous pararetrovirus]
5 Hb_010452_010 0.2386814855 - - PREDICTED: uncharacterized protein LOC104232369 [Nicotiana sylvestris]
6 Hb_002520_010 0.2489487746 - - PREDICTED: uncharacterized protein LOC105775392, partial [Gossypium raimondii]
7 Hb_000505_120 0.2609656485 - - PREDICTED: uncharacterized protein LOC105636491 [Jatropha curcas]
8 Hb_034909_010 0.2811161736 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
9 Hb_003410_020 0.2811177888 - - hypothetical protein PRUPE_ppa015000mg [Prunus persica]
10 Hb_071998_010 0.2820289562 - - PREDICTED: uncharacterized protein LOC105800957 [Gossypium raimondii]
11 Hb_004566_050 0.2821425122 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
12 Hb_111985_030 0.2821772062 - - PREDICTED: putative ribonuclease H protein At1g65750-like [Citrus sinensis]
13 Hb_011888_010 0.2823651612 - - Receptor like protein 46, putative [Theobroma cacao]
14 Hb_001318_060 0.2840217961 - - contains similarity to reverse transcriptase-like proteins [Arabidopsis thaliana]
15 Hb_010435_010 0.2853266706 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
16 Hb_144813_010 0.2870377114 - - PREDICTED: uncharacterized protein LOC105781565 [Gossypium raimondii]
17 Hb_003582_050 0.2898618346 - - hypothetical protein POPTR_0008s13950g [Populus trichocarpa]
18 Hb_002836_030 0.2907682727 - - Auxin-induced protein 5NG4, putative [Ricinus communis]
19 Hb_000320_170 0.2949339111 - - conserved hypothetical protein [Ricinus communis]
20 Hb_000417_330 0.2956744818 - - -

Gene co-expression network

sample Hb_083663_010 Hb_083663_010 Hb_015778_020 Hb_015778_020 Hb_083663_010--Hb_015778_020 Hb_011280_020 Hb_011280_020 Hb_083663_010--Hb_011280_020 Hb_011344_150 Hb_011344_150 Hb_083663_010--Hb_011344_150 Hb_010452_010 Hb_010452_010 Hb_083663_010--Hb_010452_010 Hb_002520_010 Hb_002520_010 Hb_083663_010--Hb_002520_010 Hb_000505_120 Hb_000505_120 Hb_083663_010--Hb_000505_120 Hb_015778_020--Hb_010452_010 Hb_015076_020 Hb_015076_020 Hb_015778_020--Hb_015076_020 Hb_015778_020--Hb_002520_010 Hb_015778_020--Hb_000505_120 Hb_056095_010 Hb_056095_010 Hb_015778_020--Hb_056095_010 Hb_011280_020--Hb_000505_120 Hb_008783_010 Hb_008783_010 Hb_011280_020--Hb_008783_010 Hb_011280_020--Hb_015076_020 Hb_003413_010 Hb_003413_010 Hb_011280_020--Hb_003413_010 Hb_004241_030 Hb_004241_030 Hb_011280_020--Hb_004241_030 Hb_006040_080 Hb_006040_080 Hb_011344_150--Hb_006040_080 Hb_010091_040 Hb_010091_040 Hb_011344_150--Hb_010091_040 Hb_052764_010 Hb_052764_010 Hb_011344_150--Hb_052764_010 Hb_000002_280 Hb_000002_280 Hb_011344_150--Hb_000002_280 Hb_042141_010 Hb_042141_010 Hb_011344_150--Hb_042141_010 Hb_000640_280 Hb_000640_280 Hb_011344_150--Hb_000640_280 Hb_010452_010--Hb_015076_020 Hb_010452_010--Hb_056095_010 Hb_010452_010--Hb_004241_030 Hb_010452_010--Hb_000505_120 Hb_002520_010--Hb_010452_010 Hb_000085_030 Hb_000085_030 Hb_002520_010--Hb_000085_030 Hb_000671_140 Hb_000671_140 Hb_002520_010--Hb_000671_140 Hb_000140_430 Hb_000140_430 Hb_002520_010--Hb_000140_430 Hb_000505_120--Hb_008783_010 Hb_000505_120--Hb_015076_020 Hb_000505_120--Hb_003413_010 Hb_000505_120--Hb_004241_030 Hb_097006_010 Hb_097006_010 Hb_000505_120--Hb_097006_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0142797 0.0380239 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0.0433276

CAGE analysis