Hb_083799_010

Information

Type -
Description -
Location Contig83799: 247-1545
Sequence    

Annotation

kegg
ID rcu:RCOM_0499500
description ubiquitin-protein ligase, putative
nr
ID XP_002532036.1
description ubiquitin-protein ligase, putative [Ricinus communis]
swissprot
ID Q8GWV5
description U-box domain-containing protein 3 OS=Arabidopsis thaliana GN=PUB3 PE=2 SV=2
trembl
ID B9T1B5
description Ubiquitin-protein ligase, putative OS=Ricinus communis GN=RCOM_0499500 PE=4 SV=1
Gene Ontology
ID GO:0004842
description u-box domain-containing protein 3-like isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_60020: 904-1096
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_083799_010 0.0 - - ubiquitin-protein ligase, putative [Ricinus communis]
2 Hb_002272_170 0.0654948896 - - PREDICTED: branched-chain-amino-acid aminotransferase-like protein 1 [Jatropha curcas]
3 Hb_000395_220 0.0729443539 - - PREDICTED: LOW QUALITY PROTEIN: ultraviolet-B receptor UVR8 [Jatropha curcas]
4 Hb_075315_010 0.0774919105 - - ornithine aminotransferase [Camellia sinensis]
5 Hb_005081_020 0.0818550334 - - PREDICTED: ninja-family protein mc410 [Jatropha curcas]
6 Hb_007426_140 0.0840751781 - - ornithine aminotransferase, putative [Ricinus communis]
7 Hb_000260_660 0.087006569 - - conserved hypothetical protein [Ricinus communis]
8 Hb_001105_160 0.0893611934 - - PREDICTED: protein phosphatase 2C 32 [Jatropha curcas]
9 Hb_003906_170 0.0946481254 - - alcohol dehydrogenase, putative [Ricinus communis]
10 Hb_000692_160 0.0959233629 - - Transportin 1 isoform 1 [Theobroma cacao]
11 Hb_039946_050 0.0961108797 - - catalytic, putative [Ricinus communis]
12 Hb_000251_040 0.0973058526 - - PREDICTED: DNA polymerase alpha catalytic subunit isoform X1 [Jatropha curcas]
13 Hb_001269_140 0.0977456117 - - PREDICTED: nuclear pore complex protein NUP96 [Jatropha curcas]
14 Hb_000243_300 0.098938127 - - catalytic, putative [Ricinus communis]
15 Hb_005489_140 0.1003532274 - - PREDICTED: maspardin [Jatropha curcas]
16 Hb_002217_220 0.1016792021 - - hypothetical protein POPTR_0010s15930g [Populus trichocarpa]
17 Hb_002836_100 0.1023966856 - - PREDICTED: nudix hydrolase 3 isoform X1 [Jatropha curcas]
18 Hb_007747_170 0.103929134 - - PREDICTED: uncharacterized protein At5g41620 [Jatropha curcas]
19 Hb_001160_070 0.10400741 - - PREDICTED: uncharacterized protein LOC105632163 [Jatropha curcas]
20 Hb_000009_120 0.1068500257 - - PREDICTED: probable Xaa-Pro aminopeptidase P isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_083799_010 Hb_083799_010 Hb_002272_170 Hb_002272_170 Hb_083799_010--Hb_002272_170 Hb_000395_220 Hb_000395_220 Hb_083799_010--Hb_000395_220 Hb_075315_010 Hb_075315_010 Hb_083799_010--Hb_075315_010 Hb_005081_020 Hb_005081_020 Hb_083799_010--Hb_005081_020 Hb_007426_140 Hb_007426_140 Hb_083799_010--Hb_007426_140 Hb_000260_660 Hb_000260_660 Hb_083799_010--Hb_000260_660 Hb_000251_040 Hb_000251_040 Hb_002272_170--Hb_000251_040 Hb_002272_170--Hb_000395_220 Hb_000692_160 Hb_000692_160 Hb_002272_170--Hb_000692_160 Hb_033772_070 Hb_033772_070 Hb_002272_170--Hb_033772_070 Hb_002272_170--Hb_007426_140 Hb_000395_220--Hb_007426_140 Hb_009732_020 Hb_009732_020 Hb_000395_220--Hb_009732_020 Hb_001780_150 Hb_001780_150 Hb_000395_220--Hb_001780_150 Hb_011287_010 Hb_011287_010 Hb_000395_220--Hb_011287_010 Hb_075315_010--Hb_005081_020 Hb_039946_050 Hb_039946_050 Hb_075315_010--Hb_039946_050 Hb_004450_070 Hb_004450_070 Hb_075315_010--Hb_004450_070 Hb_007747_170 Hb_007747_170 Hb_075315_010--Hb_007747_170 Hb_001105_160 Hb_001105_160 Hb_075315_010--Hb_001105_160 Hb_005081_020--Hb_000692_160 Hb_002391_210 Hb_002391_210 Hb_005081_020--Hb_002391_210 Hb_001269_140 Hb_001269_140 Hb_005081_020--Hb_001269_140 Hb_003906_170 Hb_003906_170 Hb_005081_020--Hb_003906_170 Hb_002836_100 Hb_002836_100 Hb_007426_140--Hb_002836_100 Hb_006829_100 Hb_006829_100 Hb_007426_140--Hb_006829_100 Hb_007426_140--Hb_075315_010 Hb_003849_240 Hb_003849_240 Hb_007426_140--Hb_003849_240 Hb_002217_220 Hb_002217_220 Hb_000260_660--Hb_002217_220 Hb_007765_030 Hb_007765_030 Hb_000260_660--Hb_007765_030 Hb_009615_160 Hb_009615_160 Hb_000260_660--Hb_009615_160 Hb_005074_020 Hb_005074_020 Hb_000260_660--Hb_005074_020 Hb_006006_040 Hb_006006_040 Hb_000260_660--Hb_006006_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.14915 14.2039 6.30352 14.6264 6.95573 7.57531
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.69884 4.43075 5.10155 21.0228 5.86255

CAGE analysis