Hb_084147_010

Information

Type -
Description -
Location Contig84147: 42-935
Sequence    

Annotation

kegg
ID rcu:RCOM_0878760
description amino acid transporter, putative
nr
ID XP_002527073.1
description amino acid transporter, putative [Ricinus communis]
swissprot
ID Q9LHN7
description Probable polyamine transporter At3g13620 OS=Arabidopsis thaliana GN=At3g13620 PE=2 SV=1
trembl
ID B9SM54
description Amino acid transporter, putative OS=Ricinus communis GN=RCOM_0878760 PE=4 SV=1
Gene Ontology
ID GO:0016020
description probable polyamine transporter at3g13620

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_084147_010 0.0 - - amino acid transporter, putative [Ricinus communis]
2 Hb_004241_110 0.0824544011 - - Minor allergen Alt a, putative [Ricinus communis]
3 Hb_001102_160 0.1027751874 - - PREDICTED: galacturonokinase [Jatropha curcas]
4 Hb_031089_020 0.1105313272 - - Nodulation receptor kinase precursor, putative [Ricinus communis]
5 Hb_012395_110 0.1111779155 - - PREDICTED: peroxygenase [Jatropha curcas]
6 Hb_003470_110 0.1156477561 - - unnamed protein product [Vitis vinifera]
7 Hb_030565_100 0.1196056634 - - serine hydroxymethyltransferase, putative [Ricinus communis]
8 Hb_019516_060 0.1246239422 - - PREDICTED: uncharacterized protein LOC105634259 [Jatropha curcas]
9 Hb_003001_130 0.1252040412 - - conserved hypothetical protein [Ricinus communis]
10 Hb_000603_020 0.1258417519 - - PREDICTED: uncharacterized protein LOC105638063 isoform X1 [Jatropha curcas]
11 Hb_004007_070 0.1291559046 - - adenylsulfate kinase, putative [Ricinus communis]
12 Hb_000297_140 0.1332187297 - - hypothetical protein RCOM_0293450 [Ricinus communis]
13 Hb_000246_130 0.1334882449 - - tubulin alpha chain, putative [Ricinus communis]
14 Hb_000030_130 0.1360257626 transcription factor TF Family: G2-like transcription factor, putative [Ricinus communis]
15 Hb_000820_110 0.1366343288 - - UDP-XYL synthase 6 isoform 1 [Theobroma cacao]
16 Hb_064546_010 0.1366757205 - - PREDICTED: peroxidase 3 [Jatropha curcas]
17 Hb_003086_030 0.1379254161 - - PREDICTED: fasciclin-like arabinogalactan protein 17 [Jatropha curcas]
18 Hb_189003_070 0.140416192 - - PREDICTED: peptide-N4-(N-acetyl-beta-glucosaminyl)asparagine amidase A-like [Jatropha curcas]
19 Hb_006750_010 0.1413566259 - - Beta-1,3-galactosyltransferase sqv-2, putative [Ricinus communis]
20 Hb_000023_110 0.1424639733 - - PREDICTED: probable methyltransferase PMT21 [Jatropha curcas]

Gene co-expression network

sample Hb_084147_010 Hb_084147_010 Hb_004241_110 Hb_004241_110 Hb_084147_010--Hb_004241_110 Hb_001102_160 Hb_001102_160 Hb_084147_010--Hb_001102_160 Hb_031089_020 Hb_031089_020 Hb_084147_010--Hb_031089_020 Hb_012395_110 Hb_012395_110 Hb_084147_010--Hb_012395_110 Hb_003470_110 Hb_003470_110 Hb_084147_010--Hb_003470_110 Hb_030565_100 Hb_030565_100 Hb_084147_010--Hb_030565_100 Hb_004241_110--Hb_012395_110 Hb_003001_130 Hb_003001_130 Hb_004241_110--Hb_003001_130 Hb_007894_070 Hb_007894_070 Hb_004241_110--Hb_007894_070 Hb_000227_280 Hb_000227_280 Hb_004241_110--Hb_000227_280 Hb_001318_100 Hb_001318_100 Hb_004241_110--Hb_001318_100 Hb_001102_160--Hb_012395_110 Hb_004007_070 Hb_004007_070 Hb_001102_160--Hb_004007_070 Hb_019516_060 Hb_019516_060 Hb_001102_160--Hb_019516_060 Hb_000086_090 Hb_000086_090 Hb_001102_160--Hb_000086_090 Hb_000246_130 Hb_000246_130 Hb_001102_160--Hb_000246_130 Hb_031089_020--Hb_003470_110 Hb_001922_030 Hb_001922_030 Hb_031089_020--Hb_001922_030 Hb_031089_020--Hb_004241_110 Hb_002200_070 Hb_002200_070 Hb_031089_020--Hb_002200_070 Hb_031089_020--Hb_030565_100 Hb_012395_110--Hb_004007_070 Hb_012395_110--Hb_000086_090 Hb_012395_110--Hb_019516_060 Hb_000236_180 Hb_000236_180 Hb_003470_110--Hb_000236_180 Hb_098795_030 Hb_098795_030 Hb_003470_110--Hb_098795_030 Hb_006615_230 Hb_006615_230 Hb_003470_110--Hb_006615_230 Hb_003470_110--Hb_030565_100 Hb_000077_100 Hb_000077_100 Hb_030565_100--Hb_000077_100 Hb_029223_040 Hb_029223_040 Hb_030565_100--Hb_029223_040 Hb_030565_100--Hb_000236_180 Hb_174541_030 Hb_174541_030 Hb_030565_100--Hb_174541_030 Hb_000297_140 Hb_000297_140 Hb_030565_100--Hb_000297_140
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.229265 1.50365 2.96534 8.56794 0.122616 0.184488
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.525455 0.550961 0.16767 1.11113 3.81756

CAGE analysis