Hb_084299_010

Information

Type -
Description -
Location Contig84299: 57-537
Sequence    

Annotation

kegg
ID gmx:102662257
description uncharacterized LOC102662257
nr
ID XP_009784766.1
description PREDICTED: uncharacterized protein LOC104233139 [Nicotiana sylvestris]
swissprot
ID -
description -
trembl
ID Q10JY5
description Retrotransposon protein, putative, Ty1-copia subclass OS=Oryza sativa subsp. japonica GN=LOC_Os03g29035 PE=4 SV=1
Gene Ontology
ID GO:0005488
description hypothetical protein CICLE_v10033628mg, partial

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_084299_010 0.0 - - PREDICTED: uncharacterized protein LOC104233139 [Nicotiana sylvestris]
2 Hb_002656_040 0.0002429623 desease resistance Gene Name: NB-ARC conserved hypothetical protein [Ricinus communis]
3 Hb_000001_030 0.0004701212 - - polyprotein [Citrus endogenous pararetrovirus]
4 Hb_008269_020 0.0005942157 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
5 Hb_000118_050 0.0006617045 - - hypothetical protein PRUPE_ppa015000mg [Prunus persica]
6 Hb_065059_010 0.0009197015 - - PREDICTED: uncharacterized protein LOC104907634 [Beta vulgaris subsp. vulgaris]
7 Hb_099586_010 0.0029901766 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC103696607 [Phoenix dactylifera]
8 Hb_009813_040 0.004257449 - - PREDICTED: uncharacterized protein LOC105775392, partial [Gossypium raimondii]
9 Hb_072825_010 0.0077234944 - - Uncharacterized protein TCM_023328 [Theobroma cacao]
10 Hb_002982_060 0.010642975 - - hypothetical protein JCGZ_19604 [Jatropha curcas]
11 Hb_000283_160 0.0111873274 - - hypothetical protein JCGZ_23510 [Jatropha curcas]
12 Hb_031104_010 0.0143914822 - - PREDICTED: uncharacterized protein LOC105800880, partial [Gossypium raimondii]
13 Hb_068578_010 0.0146917625 - - PREDICTED: uncharacterized protein LOC105789577 [Gossypium raimondii]
14 Hb_001629_070 0.0149510095 transcription factor TF Family: ULT Protein ULTRAPETALA2, putative [Ricinus communis]
15 Hb_048482_010 0.0169390784 - - -
16 Hb_104984_010 0.0216402281 - - PREDICTED: uncharacterized protein LOC105650298, partial [Jatropha curcas]
17 Hb_000206_260 0.0225285027 - - cysteine protease, putative [Ricinus communis]
18 Hb_189099_010 0.0239169746 - - PREDICTED: uncharacterized protein At1g04910-like [Citrus sinensis]
19 Hb_041626_010 0.0253421297 - - PREDICTED: uncharacterized protein LOC105631130 [Jatropha curcas]
20 Hb_073373_010 0.0259180986 - - hypothetical protein JCGZ_11284 [Jatropha curcas]

Gene co-expression network

sample Hb_084299_010 Hb_084299_010 Hb_002656_040 Hb_002656_040 Hb_084299_010--Hb_002656_040 Hb_000001_030 Hb_000001_030 Hb_084299_010--Hb_000001_030 Hb_008269_020 Hb_008269_020 Hb_084299_010--Hb_008269_020 Hb_000118_050 Hb_000118_050 Hb_084299_010--Hb_000118_050 Hb_065059_010 Hb_065059_010 Hb_084299_010--Hb_065059_010 Hb_099586_010 Hb_099586_010 Hb_084299_010--Hb_099586_010 Hb_002656_040--Hb_000001_030 Hb_002656_040--Hb_008269_020 Hb_002656_040--Hb_000118_050 Hb_002656_040--Hb_065059_010 Hb_002656_040--Hb_099586_010 Hb_000001_030--Hb_008269_020 Hb_000001_030--Hb_000118_050 Hb_000001_030--Hb_065059_010 Hb_000001_030--Hb_099586_010 Hb_008269_020--Hb_000118_050 Hb_008269_020--Hb_065059_010 Hb_008269_020--Hb_099586_010 Hb_000118_050--Hb_065059_010 Hb_000118_050--Hb_099586_010 Hb_065059_010--Hb_099586_010 Hb_009813_040 Hb_009813_040 Hb_099586_010--Hb_009813_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.123969 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0.478302

CAGE analysis