Hb_084304_010

Information

Type -
Description -
Location Contig84304: 13192-16968
Sequence    

Annotation

kegg
ID tcc:TCM_012854
description Auxin efflux facilitator isoform 1
nr
ID XP_012088551.1
description PREDICTED: probable auxin efflux carrier component 1c isoform X2 [Jatropha curcas]
swissprot
ID Q5SMQ9
description Auxin efflux carrier component 1 OS=Oryza sativa subsp. japonica GN=PIN1 PE=2 SV=1
trembl
ID A0A067JV99
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_27085 PE=4 SV=1
Gene Ontology
ID GO:0005737
description auxin efflux carrier component 1 family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_60169: 13187-17089
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_084304_010 0.0 - - PREDICTED: probable auxin efflux carrier component 1c isoform X2 [Jatropha curcas]
2 Hb_003427_070 0.0555463389 - - hypothetical protein POPTR_0067s00310g [Populus trichocarpa]
3 Hb_003777_150 0.0613187132 - - PREDICTED: uncharacterized protein LOC105640938 isoform X1 [Jatropha curcas]
4 Hb_006351_050 0.0880078461 - - PREDICTED: uncharacterized protein LOC105133646 [Populus euphratica]
5 Hb_000188_140 0.0938835335 - - PREDICTED: germin-like protein subfamily 3 member 2 [Jatropha curcas]
6 Hb_001500_020 0.1034579233 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
7 Hb_000739_190 0.1046088758 transcription factor TF Family: LOB LOB domain-containing protein, putative [Ricinus communis]
8 Hb_000497_080 0.1059328613 - - conserved hypothetical protein [Ricinus communis]
9 Hb_039075_010 0.1074364452 - - hypothetical protein JCGZ_23771 [Jatropha curcas]
10 Hb_135757_030 0.1084325764 - - PREDICTED: actin-depolymerizing factor 5 [Jatropha curcas]
11 Hb_002260_140 0.1089970732 - - conserved hypothetical protein [Ricinus communis]
12 Hb_000152_630 0.1099208592 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 7 [Jatropha curcas]
13 Hb_004970_100 0.1113276809 transcription factor TF Family: HSF PREDICTED: heat stress transcription factor B-4 [Jatropha curcas]
14 Hb_000175_370 0.1113623855 - - hypothetical protein EUGRSUZ_F03862 [Eucalyptus grandis]
15 Hb_000922_050 0.1115991262 - - PREDICTED: serine/threonine-protein kinase HT1-like [Jatropha curcas]
16 Hb_000614_120 0.1120740948 - - hypothetical protein JCGZ_17923 [Jatropha curcas]
17 Hb_001417_090 0.1128222631 - - PREDICTED: uncharacterized protein LOC105650625 [Jatropha curcas]
18 Hb_030360_010 0.1160179962 - - -
19 Hb_180088_010 0.1182347881 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
20 Hb_000628_060 0.1209845284 - - PREDICTED: calmodulin-like protein 5 [Solanum lycopersicum]

Gene co-expression network

sample Hb_084304_010 Hb_084304_010 Hb_003427_070 Hb_003427_070 Hb_084304_010--Hb_003427_070 Hb_003777_150 Hb_003777_150 Hb_084304_010--Hb_003777_150 Hb_006351_050 Hb_006351_050 Hb_084304_010--Hb_006351_050 Hb_000188_140 Hb_000188_140 Hb_084304_010--Hb_000188_140 Hb_001500_020 Hb_001500_020 Hb_084304_010--Hb_001500_020 Hb_000739_190 Hb_000739_190 Hb_084304_010--Hb_000739_190 Hb_003427_070--Hb_000739_190 Hb_000922_050 Hb_000922_050 Hb_003427_070--Hb_000922_050 Hb_003427_070--Hb_003777_150 Hb_000684_110 Hb_000684_110 Hb_003427_070--Hb_000684_110 Hb_039075_010 Hb_039075_010 Hb_003427_070--Hb_039075_010 Hb_000628_060 Hb_000628_060 Hb_003777_150--Hb_000628_060 Hb_004474_020 Hb_004474_020 Hb_003777_150--Hb_004474_020 Hb_004970_100 Hb_004970_100 Hb_003777_150--Hb_004970_100 Hb_069384_010 Hb_069384_010 Hb_003777_150--Hb_069384_010 Hb_006351_050--Hb_001500_020 Hb_180088_010 Hb_180088_010 Hb_006351_050--Hb_180088_010 Hb_003598_050 Hb_003598_050 Hb_006351_050--Hb_003598_050 Hb_000497_080 Hb_000497_080 Hb_006351_050--Hb_000497_080 Hb_112950_010 Hb_112950_010 Hb_006351_050--Hb_112950_010 Hb_007919_010 Hb_007919_010 Hb_006351_050--Hb_007919_010 Hb_000152_630 Hb_000152_630 Hb_000188_140--Hb_000152_630 Hb_000230_220 Hb_000230_220 Hb_000188_140--Hb_000230_220 Hb_000188_140--Hb_069384_010 Hb_000186_090 Hb_000186_090 Hb_000188_140--Hb_000186_090 Hb_000087_160 Hb_000087_160 Hb_000188_140--Hb_000087_160 Hb_001500_020--Hb_180088_010 Hb_001500_020--Hb_003598_050 Hb_001500_020--Hb_112950_010 Hb_135757_030 Hb_135757_030 Hb_001500_020--Hb_135757_030 Hb_000172_450 Hb_000172_450 Hb_001500_020--Hb_000172_450 Hb_030360_010 Hb_030360_010 Hb_000739_190--Hb_030360_010 Hb_000739_190--Hb_000684_110 Hb_000739_190--Hb_039075_010 Hb_000310_040 Hb_000310_040 Hb_000739_190--Hb_000310_040 Hb_001110_060 Hb_001110_060 Hb_000739_190--Hb_001110_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.146626 3.60201 5.491 25.9812 0.0860045 0.026641
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.475348 2.00594

CAGE analysis