Hb_084611_010

Information

Type -
Description -
Location Contig84611: 462-1701
Sequence    

Annotation

kegg
ID brp:103833451
description cold shock protein 1-like
nr
ID XP_009804611.1
description PREDICTED: uncharacterized protein LOC104249812 [Nicotiana sylvestris]
swissprot
ID -
description -
trembl
ID M1AL36
description Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400009723 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_084611_010 0.0 - - PREDICTED: uncharacterized protein LOC104249812 [Nicotiana sylvestris]
2 Hb_126907_010 0.0502429368 - - -
3 Hb_000117_170 0.0612229604 - - PREDICTED: uncharacterized protein LOC104088736 isoform X2 [Nicotiana tomentosiformis]
4 Hb_000849_110 0.0748333957 - - PREDICTED: uncharacterized protein LOC105179663 [Sesamum indicum]
5 Hb_000281_170 0.1101906122 - - polyprotein [Citrus endogenous pararetrovirus]
6 Hb_046117_040 0.1396034335 - - hypothetical protein JCGZ_07941 [Jatropha curcas]
7 Hb_002774_130 0.1671494077 - - -
8 Hb_150998_010 0.192767586 - - PREDICTED: uncharacterized protein LOC105631130 [Jatropha curcas]
9 Hb_006216_010 0.2030337524 - - PREDICTED: uncharacterized protein LOC103411650 [Malus domestica]
10 Hb_001218_080 0.2196591499 - - PREDICTED: probable leucine-rich repeat receptor-like protein kinase At1g35710 [Jatropha curcas]
11 Hb_005389_010 0.2243518855 - - hypothetical protein PRUPE_ppa016115mg [Prunus persica]
12 Hb_000825_040 0.2246922345 - - catalytic, putative [Ricinus communis]
13 Hb_001250_110 0.2310679428 transcription factor TF Family: HB hypothetical protein POPTR_0010s05340g [Populus trichocarpa]
14 Hb_003851_050 0.2451477564 - - oligopeptide transporter, putative [Ricinus communis]
15 Hb_172632_020 0.2461966551 - - -
16 Hb_057217_010 0.2489382544 - - PREDICTED: uncharacterized protein LOC104594412 [Nelumbo nucifera]
17 Hb_007292_030 0.2553478254 - - conserved hypothetical protein [Ricinus communis]
18 Hb_008453_070 0.2582026278 - - putative aquaporin [Vitis vinifera]
19 Hb_003849_230 0.2613549911 - - PREDICTED: NEP1-interacting protein 2-like [Jatropha curcas]
20 Hb_000575_130 0.2615062402 - - PREDICTED: putative G-type lectin S-receptor-like serine/threonine-protein kinase At1g61610 [Populus euphratica]

Gene co-expression network

sample Hb_084611_010 Hb_084611_010 Hb_126907_010 Hb_126907_010 Hb_084611_010--Hb_126907_010 Hb_000117_170 Hb_000117_170 Hb_084611_010--Hb_000117_170 Hb_000849_110 Hb_000849_110 Hb_084611_010--Hb_000849_110 Hb_000281_170 Hb_000281_170 Hb_084611_010--Hb_000281_170 Hb_046117_040 Hb_046117_040 Hb_084611_010--Hb_046117_040 Hb_002774_130 Hb_002774_130 Hb_084611_010--Hb_002774_130 Hb_126907_010--Hb_000117_170 Hb_126907_010--Hb_000281_170 Hb_126907_010--Hb_000849_110 Hb_126907_010--Hb_046117_040 Hb_150998_010 Hb_150998_010 Hb_126907_010--Hb_150998_010 Hb_000117_170--Hb_000281_170 Hb_000117_170--Hb_000849_110 Hb_000117_170--Hb_046117_040 Hb_000117_170--Hb_002774_130 Hb_000849_110--Hb_000281_170 Hb_000849_110--Hb_002774_130 Hb_000849_110--Hb_046117_040 Hb_000281_170--Hb_046117_040 Hb_000281_170--Hb_002774_130 Hb_046117_040--Hb_002774_130 Hb_046117_040--Hb_150998_010 Hb_002774_130--Hb_126907_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.216412 0 0 0 0.0436002
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0368109 0

CAGE analysis