Hb_084646_010

Information

Type -
Description -
Location Contig84646: 2032-5063
Sequence    

Annotation

kegg
ID cic:CICLE_v10031746mg
description hypothetical protein
nr
ID XP_006437557.1
description hypothetical protein CICLE_v10031746mg [Citrus clementina]
swissprot
ID Q93YP7
description 4-hydroxybenzoate polyprenyltransferase, mitochondrial OS=Arabidopsis thaliana GN=PPT1 PE=2 SV=1
trembl
ID M1C9U7
description Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400024499 PE=4 SV=1
Gene Ontology
ID GO:0016021
description 4-hydroxybenzoate mitochondrial-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_60237: 5066-5235
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_084646_010 0.0 - - hypothetical protein CICLE_v10031746mg [Citrus clementina]
2 Hb_000116_270 0.0584624778 - - PREDICTED: SRSF protein kinase 2-like [Jatropha curcas]
3 Hb_001016_120 0.0604914192 - - PREDICTED: 3-dehydroquinate synthase, chloroplastic [Jatropha curcas]
4 Hb_155159_020 0.0605509609 - - PREDICTED: clathrin light chain 1-like [Jatropha curcas]
5 Hb_000787_020 0.0679983015 - - PREDICTED: glucose-6-phosphate/phosphate translocator 1, chloroplastic isoform X1 [Jatropha curcas]
6 Hb_027380_130 0.0766922195 - - PREDICTED: CBL-interacting serine/threonine-protein kinase 23 isoform X2 [Jatropha curcas]
7 Hb_001159_130 0.0770152983 - - PREDICTED: protein cornichon homolog 4 [Jatropha curcas]
8 Hb_028227_070 0.0817811859 - - PREDICTED: uncharacterized protein LOC105644820 isoform X2 [Jatropha curcas]
9 Hb_004109_220 0.0821690097 - - PREDICTED: polyadenylate-binding protein-interacting protein 9-like [Populus euphratica]
10 Hb_005306_180 0.0838500744 rubber biosynthesis Gene Name: Dihydrolipoyllysine-residue acetyltransferase component 2 of pyruvate dehydrogenase complex PREDICTED: dihydrolipoyllysine-residue acetyltransferase component 2 of pyruvate dehydrogenase complex, mitochondrial-like [Jatropha curcas]
11 Hb_149985_010 0.0853990763 - - PREDICTED: transcription initiation factor IIB-2 [Cucumis sativus]
12 Hb_007416_090 0.0894967108 - - UDP-sugar transporter, putative [Ricinus communis]
13 Hb_001584_120 0.0896145621 - - PREDICTED: probable Xaa-Pro aminopeptidase 3 [Jatropha curcas]
14 Hb_001511_060 0.0923843164 - - PREDICTED: sorting and assembly machinery component 50 homolog [Jatropha curcas]
15 Hb_086639_010 0.0931416169 - - ubiquitin-protein ligase, putative [Ricinus communis]
16 Hb_000477_060 0.0934530314 - - PREDICTED: serine-threonine kinase receptor-associated protein-like [Jatropha curcas]
17 Hb_000096_010 0.0953535014 - - PREDICTED: U-box domain-containing protein 30-like [Citrus sinensis]
18 Hb_000749_220 0.0956642427 - - PREDICTED: ultraviolet-B receptor UVR8 isoform X1 [Jatropha curcas]
19 Hb_003605_090 0.0958360737 transcription factor TF Family: mTERF PREDICTED: uncharacterized protein LOC105632419 [Jatropha curcas]
20 Hb_187679_010 0.0965245772 - - -

Gene co-expression network

sample Hb_084646_010 Hb_084646_010 Hb_000116_270 Hb_000116_270 Hb_084646_010--Hb_000116_270 Hb_001016_120 Hb_001016_120 Hb_084646_010--Hb_001016_120 Hb_155159_020 Hb_155159_020 Hb_084646_010--Hb_155159_020 Hb_000787_020 Hb_000787_020 Hb_084646_010--Hb_000787_020 Hb_027380_130 Hb_027380_130 Hb_084646_010--Hb_027380_130 Hb_001159_130 Hb_001159_130 Hb_084646_010--Hb_001159_130 Hb_000116_270--Hb_001159_130 Hb_000116_270--Hb_001016_120 Hb_000200_020 Hb_000200_020 Hb_000116_270--Hb_000200_020 Hb_006478_020 Hb_006478_020 Hb_000116_270--Hb_006478_020 Hb_000477_060 Hb_000477_060 Hb_000116_270--Hb_000477_060 Hb_149985_010 Hb_149985_010 Hb_001016_120--Hb_149985_010 Hb_002481_080 Hb_002481_080 Hb_001016_120--Hb_002481_080 Hb_028227_070 Hb_028227_070 Hb_001016_120--Hb_028227_070 Hb_005054_110 Hb_005054_110 Hb_001016_120--Hb_005054_110 Hb_155159_020--Hb_001159_130 Hb_022115_020 Hb_022115_020 Hb_155159_020--Hb_022115_020 Hb_155159_020--Hb_000116_270 Hb_000603_150 Hb_000603_150 Hb_155159_020--Hb_000603_150 Hb_155159_020--Hb_000787_020 Hb_000890_150 Hb_000890_150 Hb_000787_020--Hb_000890_150 Hb_000483_260 Hb_000483_260 Hb_000787_020--Hb_000483_260 Hb_000049_210 Hb_000049_210 Hb_000787_020--Hb_000049_210 Hb_000140_380 Hb_000140_380 Hb_000787_020--Hb_000140_380 Hb_001300_150 Hb_001300_150 Hb_027380_130--Hb_001300_150 Hb_023344_120 Hb_023344_120 Hb_027380_130--Hb_023344_120 Hb_000676_250 Hb_000676_250 Hb_027380_130--Hb_000676_250 Hb_027380_130--Hb_001159_130 Hb_065525_040 Hb_065525_040 Hb_027380_130--Hb_065525_040 Hb_000703_350 Hb_000703_350 Hb_027380_130--Hb_000703_350 Hb_003177_030 Hb_003177_030 Hb_001159_130--Hb_003177_030 Hb_001159_130--Hb_000603_150 Hb_001159_130--Hb_000200_020 Hb_000019_030 Hb_000019_030 Hb_001159_130--Hb_000019_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.56216 2.99718 3.34927 7.42313 3.08382 4.26736
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.11661 6.27871 7.01644 5.97837 3.42479

CAGE analysis