Hb_084812_010

Information

Type -
Description -
Location Contig84812: 3-506
Sequence    

Annotation

kegg
ID vvi:104882254
description putative RING-H2 finger protein ATL21B
nr
ID XP_010662992.1
description PREDICTED: putative RING-H2 finger protein ATL21B [Vitis vinifera]
swissprot
ID P0CH02
description Putative RING-H2 finger protein ATL21B OS=Arabidopsis thaliana GN=ATL21B PE=3 SV=1
trembl
ID F6H7E4
description Putative uncharacterized protein OS=Vitis vinifera GN=VIT_16s0098g00210 PE=4 SV=1
Gene Ontology
ID GO:0016772
description probable receptor-like protein kinase at1g67000

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_084812_010 0.0 - - PREDICTED: putative RING-H2 finger protein ATL21B [Vitis vinifera]
2 Hb_000684_110 0.0512623348 - - hypothetical protein POPTR_0006s13250g [Populus trichocarpa]
3 Hb_001110_060 0.0952550542 - - Dehydration-responsive protein RD22 precursor, putative [Ricinus communis]
4 Hb_004112_070 0.0963191397 - - -
5 Hb_000861_060 0.0982761373 - - PREDICTED: caffeic acid 3-O-methyltransferase-like [Jatropha curcas]
6 Hb_000586_110 0.1045438379 - - trehalose-6-phosphate synthase, putative [Ricinus communis]
7 Hb_026218_010 0.105599548 - - conserved hypothetical protein [Ricinus communis]
8 Hb_000739_190 0.1056034338 transcription factor TF Family: LOB LOB domain-containing protein, putative [Ricinus communis]
9 Hb_002636_120 0.1061973564 - - Protein bem46, putative [Ricinus communis]
10 Hb_000227_300 0.1082252908 - - conserved hypothetical protein [Ricinus communis]
11 Hb_059275_010 0.1083534164 - - PREDICTED: glucomannan 4-beta-mannosyltransferase 9 [Jatropha curcas]
12 Hb_016911_010 0.1107384166 - - hypothetical protein POPTR_0010s15010g [Populus trichocarpa]
13 Hb_009070_010 0.1126212777 - - Spermidine synthase, putative [Ricinus communis]
14 Hb_007122_020 0.1167707981 - - PREDICTED: protein TRANSPARENT TESTA 12-like [Jatropha curcas]
15 Hb_003032_110 0.1172597345 - - -
16 Hb_050898_030 0.1188745962 - - conserved hypothetical protein [Ricinus communis]
17 Hb_000085_410 0.1190702246 - - hypothetical protein POPTR_0011s09040g [Populus trichocarpa]
18 Hb_007426_190 0.1200608741 - - PREDICTED: uncharacterized protein LOC103325200 [Prunus mume]
19 Hb_000724_060 0.1207843876 transcription factor TF Family: MIKC PREDICTED: truncated transcription factor CAULIFLOWER A-like [Jatropha curcas]
20 Hb_001775_140 0.1214703231 - - Phytosulfokine 3 precursor, putative isoform 2 [Theobroma cacao]

Gene co-expression network

sample Hb_084812_010 Hb_084812_010 Hb_000684_110 Hb_000684_110 Hb_084812_010--Hb_000684_110 Hb_001110_060 Hb_001110_060 Hb_084812_010--Hb_001110_060 Hb_004112_070 Hb_004112_070 Hb_084812_010--Hb_004112_070 Hb_000861_060 Hb_000861_060 Hb_084812_010--Hb_000861_060 Hb_000586_110 Hb_000586_110 Hb_084812_010--Hb_000586_110 Hb_026218_010 Hb_026218_010 Hb_084812_010--Hb_026218_010 Hb_000739_190 Hb_000739_190 Hb_000684_110--Hb_000739_190 Hb_000684_110--Hb_004112_070 Hb_000684_110--Hb_001110_060 Hb_003427_070 Hb_003427_070 Hb_000684_110--Hb_003427_070 Hb_000139_390 Hb_000139_390 Hb_000684_110--Hb_000139_390 Hb_001408_080 Hb_001408_080 Hb_001110_060--Hb_001408_080 Hb_005111_020 Hb_005111_020 Hb_001110_060--Hb_005111_020 Hb_003032_110 Hb_003032_110 Hb_001110_060--Hb_003032_110 Hb_001427_100 Hb_001427_100 Hb_001110_060--Hb_001427_100 Hb_036520_030 Hb_036520_030 Hb_001110_060--Hb_036520_030 Hb_000085_410 Hb_000085_410 Hb_001110_060--Hb_000085_410 Hb_004112_070--Hb_000139_390 Hb_000000_320 Hb_000000_320 Hb_004112_070--Hb_000000_320 Hb_004112_070--Hb_005111_020 Hb_004112_070--Hb_001110_060 Hb_001022_070 Hb_001022_070 Hb_004112_070--Hb_001022_070 Hb_007426_190 Hb_007426_190 Hb_000861_060--Hb_007426_190 Hb_097292_010 Hb_097292_010 Hb_000861_060--Hb_097292_010 Hb_000227_300 Hb_000227_300 Hb_000861_060--Hb_000227_300 Hb_000861_060--Hb_000586_110 Hb_005731_040 Hb_005731_040 Hb_000861_060--Hb_005731_040 Hb_000310_040 Hb_000310_040 Hb_000861_060--Hb_000310_040 Hb_000586_110--Hb_026218_010 Hb_000586_110--Hb_005731_040 Hb_000586_110--Hb_097292_010 Hb_001025_130 Hb_001025_130 Hb_000586_110--Hb_001025_130 Hb_002636_120 Hb_002636_120 Hb_000586_110--Hb_002636_120 Hb_026218_010--Hb_005731_040 Hb_026218_010--Hb_002636_120 Hb_026218_010--Hb_001025_130 Hb_001775_140 Hb_001775_140 Hb_026218_010--Hb_001775_140 Hb_001709_120 Hb_001709_120 Hb_026218_010--Hb_001709_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 1.10125 3.11187 7.39294 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 1.27467

CAGE analysis