Hb_084934_010

Information

Type -
Description -
Location Contig84934: 53-3681
Sequence    

Annotation

kegg
ID pop:POPTR_0005s05820g
description hypothetical protein
nr
ID KDP26124.1
description hypothetical protein JCGZ_22225 [Jatropha curcas]
swissprot
ID Q9CRC3
description UPF0235 protein C15orf40 homolog OS=Mus musculus PE=2 SV=1
trembl
ID A0A067K2V7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_22225 PE=3 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_084934_010 0.0 - - hypothetical protein JCGZ_22225 [Jatropha curcas]
2 Hb_011472_040 0.0939718516 - - PREDICTED: clathrin light chain 3 [Jatropha curcas]
3 Hb_006189_010 0.094606924 - - -
4 Hb_003086_110 0.1028564086 - - PREDICTED: dihydroneopterin aldolase-like isoform X2 [Prunus mume]
5 Hb_157854_010 0.1052363651 - - PREDICTED: myb family transcription factor APL-like [Jatropha curcas]
6 Hb_118977_020 0.1087533697 - - PREDICTED: uncharacterized protein At3g03773 [Jatropha curcas]
7 Hb_030312_040 0.1106942117 - - hypothetical protein JCGZ_04876 [Jatropha curcas]
8 Hb_002263_010 0.1134181377 - - hypothetical protein CICLE_v10012259mg [Citrus clementina]
9 Hb_000272_100 0.1136975823 - - PREDICTED: uncharacterized protein LOC103949110 [Pyrus x bretschneideri]
10 Hb_134226_010 0.1137512186 - - 40S ribosomal protein S21e, putative [Ricinus communis]
11 Hb_003086_020 0.1154806783 - - hypothetical protein JCGZ_06091 [Jatropha curcas]
12 Hb_012052_060 0.1161743356 - - hypothetical protein POPTR_0018s10190g [Populus trichocarpa]
13 Hb_002762_060 0.1173266115 - - PREDICTED: diphthine methyltransferase homolog [Jatropha curcas]
14 Hb_004055_010 0.1181272872 - - dead box ATP-dependent RNA helicase, putative [Ricinus communis]
15 Hb_004607_140 0.1183743836 transcription factor TF Family: AP2 PREDICTED: AP2-like ethylene-responsive transcription factor PLT1 [Populus euphratica]
16 Hb_000997_060 0.1196817439 - - PREDICTED: DNA repair protein XRCC4 [Jatropha curcas]
17 Hb_002918_280 0.1201173691 - - hypothetical protein POPTR_0004s04800g [Populus trichocarpa]
18 Hb_000442_100 0.1214463977 - - PREDICTED: staphylococcal-like nuclease CAN2 [Jatropha curcas]
19 Hb_000331_310 0.1230926417 - - PREDICTED: uncharacterized protein LOC105640232 [Jatropha curcas]
20 Hb_008959_030 0.1241242258 - - PREDICTED: universal stress protein A-like protein [Jatropha curcas]

Gene co-expression network

sample Hb_084934_010 Hb_084934_010 Hb_011472_040 Hb_011472_040 Hb_084934_010--Hb_011472_040 Hb_006189_010 Hb_006189_010 Hb_084934_010--Hb_006189_010 Hb_003086_110 Hb_003086_110 Hb_084934_010--Hb_003086_110 Hb_157854_010 Hb_157854_010 Hb_084934_010--Hb_157854_010 Hb_118977_020 Hb_118977_020 Hb_084934_010--Hb_118977_020 Hb_030312_040 Hb_030312_040 Hb_084934_010--Hb_030312_040 Hb_011472_040--Hb_006189_010 Hb_001975_070 Hb_001975_070 Hb_011472_040--Hb_001975_070 Hb_011472_040--Hb_030312_040 Hb_001655_070 Hb_001655_070 Hb_011472_040--Hb_001655_070 Hb_012052_060 Hb_012052_060 Hb_011472_040--Hb_012052_060 Hb_180333_010 Hb_180333_010 Hb_006189_010--Hb_180333_010 Hb_004607_150 Hb_004607_150 Hb_006189_010--Hb_004607_150 Hb_001186_060 Hb_001186_060 Hb_006189_010--Hb_001186_060 Hb_006189_010--Hb_157854_010 Hb_007166_050 Hb_007166_050 Hb_003086_110--Hb_007166_050 Hb_003086_020 Hb_003086_020 Hb_003086_110--Hb_003086_020 Hb_003086_110--Hb_118977_020 Hb_000272_100 Hb_000272_100 Hb_003086_110--Hb_000272_100 Hb_001437_040 Hb_001437_040 Hb_003086_110--Hb_001437_040 Hb_000617_320 Hb_000617_320 Hb_003086_110--Hb_000617_320 Hb_002762_060 Hb_002762_060 Hb_157854_010--Hb_002762_060 Hb_157854_010--Hb_118977_020 Hb_157854_010--Hb_003086_020 Hb_003185_020 Hb_003185_020 Hb_157854_010--Hb_003185_020 Hb_022250_040 Hb_022250_040 Hb_157854_010--Hb_022250_040 Hb_004607_140 Hb_004607_140 Hb_157854_010--Hb_004607_140 Hb_118977_020--Hb_007166_050 Hb_001019_090 Hb_001019_090 Hb_118977_020--Hb_001019_090 Hb_118977_020--Hb_000617_320 Hb_118977_020--Hb_001437_040 Hb_006452_030 Hb_006452_030 Hb_030312_040--Hb_006452_030 Hb_000703_080 Hb_000703_080 Hb_030312_040--Hb_000703_080 Hb_002263_010 Hb_002263_010 Hb_030312_040--Hb_002263_010 Hb_003494_240 Hb_003494_240 Hb_030312_040--Hb_003494_240 Hb_000608_120 Hb_000608_120 Hb_030312_040--Hb_000608_120 Hb_008725_250 Hb_008725_250 Hb_030312_040--Hb_008725_250
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
78.9725 35.0576 2.92595 10.1425 65.5448 91.1994
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
99.8192 73.4612 33.3761 26.9497 2.09617

CAGE analysis