Hb_085010_010

Information

Type -
Description -
Location Contig85010: 156-776
Sequence    

Annotation

kegg
ID vvi:100233064
description MLO12; MLO-like protein 3
nr
ID XP_010651141.1
description PREDICTED: MLO-like protein 3 isoform X2 [Vitis vinifera]
swissprot
ID Q94KB9
description MLO-like protein 3 OS=Arabidopsis thaliana GN=MLO3 PE=2 SV=1
trembl
ID F6GTZ2
description MLO-like protein OS=Vitis vinifera GN=MLO PE=3 SV=1
Gene Ontology
ID GO:0016021
description mlo-like protein 3

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_085010_010 0.0 - - PREDICTED: MLO-like protein 3 isoform X2 [Vitis vinifera]
2 Hb_011470_010 0.0848065659 - - hypothetical protein CISIN_1g022501mg [Citrus sinensis]
3 Hb_008111_010 0.0987517596 - - hypothetical protein VITISV_021527 [Vitis vinifera]
4 Hb_126466_010 0.1157072727 - - alcohol dehydrogenase, putative [Ricinus communis]
5 Hb_002272_070 0.1228417247 - - PREDICTED: keratin, type I cytoskeletal 9 [Jatropha curcas]
6 Hb_001971_020 0.1314835113 - - PREDICTED: alpha-dioxygenase 2 [Populus euphratica]
7 Hb_005306_020 0.1327026094 transcription factor TF Family: MYB PREDICTED: transcription factor MYB86 [Jatropha curcas]
8 Hb_005054_280 0.1405191613 transcription factor TF Family: HB Protein WUSCHEL, putative [Ricinus communis]
9 Hb_000866_390 0.1412532895 - - PREDICTED: O-glucosyltransferase rumi homolog [Jatropha curcas]
10 Hb_001008_020 0.1456159871 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
11 Hb_000603_120 0.1492481871 - - Protein kinase APK1A, chloroplast precursor, putative [Ricinus communis]
12 Hb_000072_160 0.1540448781 - - proline oxidase [Manihot esculenta]
13 Hb_000563_120 0.1576897536 - - hypothetical protein JCGZ_18936 [Jatropha curcas]
14 Hb_006615_190 0.1596651899 - - UDP-glycosyltransferase 1 [Linum usitatissimum]
15 Hb_002000_130 0.1637049143 - - PREDICTED: abscisic stress-ripening protein 2-like [Eucalyptus grandis]
16 Hb_001143_140 0.1648682085 - - Aldehyde dehydrogenase, putative [Ricinus communis]
17 Hb_000899_060 0.1664682062 - - PREDICTED: uncharacterized protein LOC105793631 [Gossypium raimondii]
18 Hb_002329_030 0.1672422682 - - PREDICTED: pleiotropic drug resistance protein 2-like isoform X1 [Jatropha curcas]
19 Hb_000028_460 0.1692811217 - - hypothetical protein POPTR_0015s05340g [Populus trichocarpa]
20 Hb_001357_360 0.1701761786 - - zinc finger protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_085010_010 Hb_085010_010 Hb_011470_010 Hb_011470_010 Hb_085010_010--Hb_011470_010 Hb_008111_010 Hb_008111_010 Hb_085010_010--Hb_008111_010 Hb_126466_010 Hb_126466_010 Hb_085010_010--Hb_126466_010 Hb_002272_070 Hb_002272_070 Hb_085010_010--Hb_002272_070 Hb_001971_020 Hb_001971_020 Hb_085010_010--Hb_001971_020 Hb_005306_020 Hb_005306_020 Hb_085010_010--Hb_005306_020 Hb_011470_010--Hb_002272_070 Hb_000072_160 Hb_000072_160 Hb_011470_010--Hb_000072_160 Hb_011470_010--Hb_126466_010 Hb_002329_030 Hb_002329_030 Hb_011470_010--Hb_002329_030 Hb_014361_130 Hb_014361_130 Hb_011470_010--Hb_014361_130 Hb_026144_030 Hb_026144_030 Hb_008111_010--Hb_026144_030 Hb_005054_280 Hb_005054_280 Hb_008111_010--Hb_005054_280 Hb_008111_010--Hb_005306_020 Hb_008111_010--Hb_001971_020 Hb_001143_140 Hb_001143_140 Hb_008111_010--Hb_001143_140 Hb_126466_010--Hb_002272_070 Hb_001823_070 Hb_001823_070 Hb_126466_010--Hb_001823_070 Hb_003439_020 Hb_003439_020 Hb_126466_010--Hb_003439_020 Hb_000028_460 Hb_000028_460 Hb_126466_010--Hb_000028_460 Hb_002477_080 Hb_002477_080 Hb_126466_010--Hb_002477_080 Hb_002272_070--Hb_002329_030 Hb_002272_070--Hb_000072_160 Hb_006615_190 Hb_006615_190 Hb_002272_070--Hb_006615_190 Hb_145139_010 Hb_145139_010 Hb_002272_070--Hb_145139_010 Hb_001357_360 Hb_001357_360 Hb_001971_020--Hb_001357_360 Hb_000563_120 Hb_000563_120 Hb_001971_020--Hb_000563_120 Hb_001971_020--Hb_005306_020 Hb_000264_340 Hb_000264_340 Hb_001971_020--Hb_000264_340 Hb_007320_020 Hb_007320_020 Hb_001971_020--Hb_007320_020 Hb_005306_020--Hb_001357_360 Hb_028872_100 Hb_028872_100 Hb_005306_020--Hb_028872_100 Hb_005306_020--Hb_000264_340 Hb_000767_010 Hb_000767_010 Hb_005306_020--Hb_000767_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 5.46634 0.309624 3.04643 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 2.63393 3.45096

CAGE analysis