Hb_085187_010

Information

Type -
Description -
Location Contig85187: 3105-5126
Sequence    

Annotation

kegg
ID rcu:RCOM_0174470
description hypothetical protein
nr
ID AAO37645.1
description NBS-LRR resistance protein RGH1 [Manihot esculenta]
swissprot
ID Q7XBQ9
description Disease resistance protein RGA2 OS=Solanum bulbocastanum GN=RGA2 PE=1 SV=1
trembl
ID Q84XG0
description NBS-LRR resistance protein RGH1 OS=Manihot esculenta PE=4 SV=1
Gene Ontology
ID GO:0005515
description nbs-lrr resistance protein rgh2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_085187_010 0.0 - - NBS-LRR resistance protein RGH1 [Manihot esculenta]
2 Hb_001210_040 0.1271408747 - - PREDICTED: molybdate transporter 2 [Jatropha curcas]
3 Hb_000244_260 0.1272923753 - - PREDICTED: probable pectinesterase/pectinesterase inhibitor 51 isoform X2 [Jatropha curcas]
4 Hb_014497_060 0.1316001237 - - phosphofructokinase, putative [Ricinus communis]
5 Hb_002026_070 0.1342074609 - - hypothetical protein PHAVU_002G2910001g, partial [Phaseolus vulgaris]
6 Hb_003490_050 0.1405812122 - - PREDICTED: probable cyclic nucleotide-gated ion channel 20, chloroplastic [Jatropha curcas]
7 Hb_004984_080 0.1409970311 - - PREDICTED: chitin elicitor receptor kinase 1 isoform X1 [Jatropha curcas]
8 Hb_003058_200 0.143147904 - - PREDICTED: dihydropyrimidinase [Populus euphratica]
9 Hb_000922_260 0.1441106727 - - PREDICTED: pantothenate kinase 2 [Jatropha curcas]
10 Hb_000019_170 0.1441320279 - - PREDICTED: alpha-mannosidase [Jatropha curcas]
11 Hb_002232_490 0.1458280017 - - PREDICTED: probable sphingolipid transporter spinster homolog 2 isoform X1 [Jatropha curcas]
12 Hb_000668_110 0.1494564152 - - PREDICTED: acetyl-CoA carboxylase 1-like [Jatropha curcas]
13 Hb_059741_010 0.1559921152 - - PREDICTED: cellulose synthase A catalytic subunit 1 [UDP-forming] [Jatropha curcas]
14 Hb_001266_120 0.156195949 - - auxilin, putative [Ricinus communis]
15 Hb_000649_060 0.1575601875 - - PREDICTED: E3 ubiquitin protein ligase RIE1 [Jatropha curcas]
16 Hb_021297_020 0.1600056915 - - Cyclic nucleotide-gated ion channel, putative [Ricinus communis]
17 Hb_001473_170 0.1612022914 - - PREDICTED: non-lysosomal glucosylceramidase [Jatropha curcas]
18 Hb_000256_110 0.1617505315 - - PREDICTED: aspartate aminotransferase, chloroplastic [Jatropha curcas]
19 Hb_000473_030 0.163190668 - - hypothetical protein JCGZ_19297 [Jatropha curcas]
20 Hb_000330_150 0.1633963543 - - PREDICTED: dihydroflavonol-4-reductase-like [Jatropha curcas]

Gene co-expression network

sample Hb_085187_010 Hb_085187_010 Hb_001210_040 Hb_001210_040 Hb_085187_010--Hb_001210_040 Hb_000244_260 Hb_000244_260 Hb_085187_010--Hb_000244_260 Hb_014497_060 Hb_014497_060 Hb_085187_010--Hb_014497_060 Hb_002026_070 Hb_002026_070 Hb_085187_010--Hb_002026_070 Hb_003490_050 Hb_003490_050 Hb_085187_010--Hb_003490_050 Hb_004984_080 Hb_004984_080 Hb_085187_010--Hb_004984_080 Hb_002400_060 Hb_002400_060 Hb_001210_040--Hb_002400_060 Hb_021297_020 Hb_021297_020 Hb_001210_040--Hb_021297_020 Hb_003340_010 Hb_003340_010 Hb_001210_040--Hb_003340_010 Hb_027445_020 Hb_027445_020 Hb_001210_040--Hb_027445_020 Hb_001801_020 Hb_001801_020 Hb_001210_040--Hb_001801_020 Hb_126976_010 Hb_126976_010 Hb_001210_040--Hb_126976_010 Hb_002072_010 Hb_002072_010 Hb_000244_260--Hb_002072_010 Hb_000254_070 Hb_000254_070 Hb_000244_260--Hb_000254_070 Hb_011310_050 Hb_011310_050 Hb_000244_260--Hb_011310_050 Hb_030565_110 Hb_030565_110 Hb_000244_260--Hb_030565_110 Hb_003058_200 Hb_003058_200 Hb_000244_260--Hb_003058_200 Hb_000244_260--Hb_002026_070 Hb_000256_110 Hb_000256_110 Hb_014497_060--Hb_000256_110 Hb_014497_060--Hb_002026_070 Hb_002902_140 Hb_002902_140 Hb_014497_060--Hb_002902_140 Hb_002232_490 Hb_002232_490 Hb_014497_060--Hb_002232_490 Hb_002631_130 Hb_002631_130 Hb_014497_060--Hb_002631_130 Hb_000922_260 Hb_000922_260 Hb_014497_060--Hb_000922_260 Hb_169586_010 Hb_169586_010 Hb_002026_070--Hb_169586_010 Hb_000019_170 Hb_000019_170 Hb_002026_070--Hb_000019_170 Hb_002026_070--Hb_000922_260 Hb_002026_070--Hb_002232_490 Hb_003490_050--Hb_002232_490 Hb_003490_050--Hb_000922_260 Hb_003490_060 Hb_003490_060 Hb_003490_050--Hb_003490_060 Hb_000109_260 Hb_000109_260 Hb_003490_050--Hb_000109_260 Hb_005571_010 Hb_005571_010 Hb_003490_050--Hb_005571_010 Hb_001341_010 Hb_001341_010 Hb_003490_050--Hb_001341_010 Hb_006816_230 Hb_006816_230 Hb_004984_080--Hb_006816_230 Hb_007933_040 Hb_007933_040 Hb_004984_080--Hb_007933_040 Hb_004984_080--Hb_001210_040 Hb_000649_060 Hb_000649_060 Hb_004984_080--Hb_000649_060 Hb_002639_040 Hb_002639_040 Hb_004984_080--Hb_002639_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.234365 0.386056 0.405628 1.01263 0.53362 0.240346
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.145328 0.0571623 0.320446 1.34883 1.60489

CAGE analysis