Hb_085226_010

Information

Type -
Description -
Location Contig85226: 2901-9128
Sequence    

Annotation

kegg
ID pop:POPTR_0002s03930g
description POPTRDRAFT_798495; hypothetical protein
nr
ID XP_002300776.2
description hypothetical protein POPTR_0002s03930g [Populus trichocarpa]
swissprot
ID Q9XFM4
description 13S globulin seed storage protein 3 OS=Fagopyrum esculentum GN=FAGAG1 PE=1 SV=1
trembl
ID B9GS12
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0002s03930g PE=4 SV=2
Gene Ontology
ID GO:0045735
description legumin a

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_085226_010 0.0 - - hypothetical protein POPTR_0002s03930g [Populus trichocarpa]
2 Hb_000138_190 0.2046962453 - - omega-6 fatty acid desaturase [Hevea brasiliensis]
3 Hb_002471_200 0.2057770574 - - hypothetical protein POPTR_0010s11380g [Populus trichocarpa]
4 Hb_007765_060 0.2065892522 - - Proliferating cell nuclear antigen [Theobroma cacao]
5 Hb_057183_040 0.2142372548 - - PREDICTED: WPP domain-interacting tail-anchored protein 2 [Jatropha curcas]
6 Hb_100414_010 0.2165477201 rubber biosynthesis Gene Name: Farnesyl diphosphate synthase farnesyl pyrophosphate synthase [Hevea brasiliensis]
7 Hb_007741_170 0.2174234785 transcription factor TF Family: C2H2 PREDICTED: zinc finger protein ZAT4-like [Jatropha curcas]
8 Hb_002025_230 0.2175263053 transcription factor TF Family: C2H2 PREDICTED: zinc finger protein NUTCRACKER-like [Populus euphratica]
9 Hb_185467_010 0.2175272054 - - -
10 Hb_028358_010 0.2175918916 - - PREDICTED: serine/threonine-protein kinase CTR1 isoform X1 [Jatropha curcas]
11 Hb_001673_120 0.2192275791 - - PREDICTED: uncharacterized protein LOC105635794 [Jatropha curcas]
12 Hb_000034_140 0.2193481468 - - PREDICTED: mechanosensitive ion channel protein 2, chloroplastic-like isoform X3 [Jatropha curcas]
13 Hb_000815_100 0.2204769199 - - -
14 Hb_003106_010 0.2206453691 - - PREDICTED: microtubule-associated protein TORTIFOLIA1 [Jatropha curcas]
15 Hb_000926_020 0.2225558543 - - -
16 Hb_000120_240 0.225370436 - - PREDICTED: uncharacterized protein LOC105630166 [Jatropha curcas]
17 Hb_000684_240 0.2263479546 - - hypothetical protein RCOM_0819620 [Ricinus communis]
18 Hb_000421_180 0.2269287566 - - ATP binding protein, putative [Ricinus communis]
19 Hb_030736_010 0.2279347998 - - conserved hypothetical protein [Ricinus communis]
20 Hb_000179_200 0.2289248247 - - unnamed protein product [Vitis vinifera]

Gene co-expression network

sample Hb_085226_010 Hb_085226_010 Hb_000138_190 Hb_000138_190 Hb_085226_010--Hb_000138_190 Hb_002471_200 Hb_002471_200 Hb_085226_010--Hb_002471_200 Hb_007765_060 Hb_007765_060 Hb_085226_010--Hb_007765_060 Hb_057183_040 Hb_057183_040 Hb_085226_010--Hb_057183_040 Hb_100414_010 Hb_100414_010 Hb_085226_010--Hb_100414_010 Hb_007741_170 Hb_007741_170 Hb_085226_010--Hb_007741_170 Hb_002025_230 Hb_002025_230 Hb_000138_190--Hb_002025_230 Hb_000138_190--Hb_007741_170 Hb_005298_060 Hb_005298_060 Hb_000138_190--Hb_005298_060 Hb_031042_040 Hb_031042_040 Hb_000138_190--Hb_031042_040 Hb_001195_110 Hb_001195_110 Hb_000138_190--Hb_001195_110 Hb_003636_090 Hb_003636_090 Hb_000138_190--Hb_003636_090 Hb_001956_050 Hb_001956_050 Hb_002471_200--Hb_001956_050 Hb_004117_030 Hb_004117_030 Hb_002471_200--Hb_004117_030 Hb_073973_170 Hb_073973_170 Hb_002471_200--Hb_073973_170 Hb_002471_200--Hb_007765_060 Hb_002471_200--Hb_007741_170 Hb_000740_070 Hb_000740_070 Hb_007765_060--Hb_000740_070 Hb_005725_070 Hb_005725_070 Hb_007765_060--Hb_005725_070 Hb_000487_100 Hb_000487_100 Hb_007765_060--Hb_000487_100 Hb_007765_060--Hb_001956_050 Hb_000544_040 Hb_000544_040 Hb_007765_060--Hb_000544_040 Hb_007765_060--Hb_004117_030 Hb_008453_150 Hb_008453_150 Hb_057183_040--Hb_008453_150 Hb_000028_470 Hb_000028_470 Hb_057183_040--Hb_000028_470 Hb_001140_200 Hb_001140_200 Hb_057183_040--Hb_001140_200 Hb_001823_100 Hb_001823_100 Hb_057183_040--Hb_001823_100 Hb_000120_240 Hb_000120_240 Hb_057183_040--Hb_000120_240 Hb_003060_070 Hb_003060_070 Hb_057183_040--Hb_003060_070 Hb_006120_200 Hb_006120_200 Hb_100414_010--Hb_006120_200 Hb_004286_040 Hb_004286_040 Hb_100414_010--Hb_004286_040 Hb_000018_190 Hb_000018_190 Hb_100414_010--Hb_000018_190 Hb_000548_030 Hb_000548_030 Hb_100414_010--Hb_000548_030 Hb_027380_040 Hb_027380_040 Hb_100414_010--Hb_027380_040 Hb_003018_140 Hb_003018_140 Hb_100414_010--Hb_003018_140 Hb_007741_170--Hb_005298_060 Hb_007741_170--Hb_073973_170 Hb_002307_050 Hb_002307_050 Hb_007741_170--Hb_002307_050 Hb_007741_170--Hb_027380_040 Hb_002078_430 Hb_002078_430 Hb_007741_170--Hb_002078_430
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
10.2654 0.311832 2.8391 0.64652 2.49908 2.5243
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.51922 1.26555 4.18944 0.467479 0.54023

CAGE analysis