Hb_085375_010

Information

Type -
Description -
Location Contig85375: 3869-6325
Sequence    

Annotation

kegg
ID rcu:RCOM_0586980
description protein with unknown function
nr
ID XP_002522999.1
description protein with unknown function [Ricinus communis]
swissprot
ID P51910
description Apolipoprotein D OS=Mus musculus GN=Apod PE=2 SV=1
trembl
ID B9SAI0
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0586980 PE=4 SV=1
Gene Ontology
ID GO:0009535
description apolipoprotein d

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_60523: 5441-6306
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_085375_010 0.0 - - protein with unknown function [Ricinus communis]
2 Hb_097433_010 0.1455473137 - - PREDICTED: TPR repeat-containing thioredoxin TDX [Jatropha curcas]
3 Hb_000008_230 0.1671927533 - - hypothetical protein POPTR_0004s22120g [Populus trichocarpa]
4 Hb_004712_110 0.1806090986 - - 30S ribosomal protein S10, putative [Ricinus communis]
5 Hb_003125_140 0.1831984409 - - PREDICTED: uncharacterized protein LOC105648796 [Jatropha curcas]
6 Hb_000206_130 0.1920171672 - - unnamed protein product [Vitis vinifera]
7 Hb_000580_130 0.192537502 - - hypothetical protein JCGZ_14541 [Jatropha curcas]
8 Hb_002918_310 0.1968842266 - - PREDICTED: dnaJ protein homolog 1-like [Jatropha curcas]
9 Hb_004635_130 0.2011361259 - - PREDICTED: probable small nuclear ribonucleoprotein G [Populus euphratica]
10 Hb_008749_050 0.2016071712 - - PREDICTED: uncharacterized J domain-containing protein C4H3.01 [Jatropha curcas]
11 Hb_000424_160 0.2016415134 - - hypothetical protein POPTR_0006s23570g [Populus trichocarpa]
12 Hb_003327_030 0.2027144714 - - Hsc70-interacting protein, putative [Ricinus communis]
13 Hb_035947_010 0.2044925841 - - PREDICTED: serine/threonine-protein phosphatase 7 long form homolog [Elaeis guineensis]
14 Hb_001534_070 0.2068014665 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 38 [Eucalyptus grandis]
15 Hb_000318_260 0.2081534382 - - PREDICTED: cell division cycle-associated 7-like protein [Jatropha curcas]
16 Hb_012340_020 0.2092493038 - - PREDICTED: putative pentatricopeptide repeat-containing protein At3g25060, mitochondrial [Jatropha curcas]
17 Hb_006913_090 0.2151551284 - - PREDICTED: uncharacterized protein LOC101215996 [Cucumis sativus]
18 Hb_001433_020 0.2191021448 - - PREDICTED: bidirectional sugar transporter SWEET16-like [Jatropha curcas]
19 Hb_000040_050 0.2217497853 - - PREDICTED: uncharacterized protein LOC102617857 isoform X1 [Citrus sinensis]
20 Hb_003688_200 0.2228150819 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_085375_010 Hb_085375_010 Hb_097433_010 Hb_097433_010 Hb_085375_010--Hb_097433_010 Hb_000008_230 Hb_000008_230 Hb_085375_010--Hb_000008_230 Hb_004712_110 Hb_004712_110 Hb_085375_010--Hb_004712_110 Hb_003125_140 Hb_003125_140 Hb_085375_010--Hb_003125_140 Hb_000206_130 Hb_000206_130 Hb_085375_010--Hb_000206_130 Hb_000580_130 Hb_000580_130 Hb_085375_010--Hb_000580_130 Hb_003327_030 Hb_003327_030 Hb_097433_010--Hb_003327_030 Hb_035947_010 Hb_035947_010 Hb_097433_010--Hb_035947_010 Hb_002918_310 Hb_002918_310 Hb_097433_010--Hb_002918_310 Hb_004635_130 Hb_004635_130 Hb_097433_010--Hb_004635_130 Hb_002814_120 Hb_002814_120 Hb_097433_010--Hb_002814_120 Hb_008749_050 Hb_008749_050 Hb_000008_230--Hb_008749_050 Hb_001769_020 Hb_001769_020 Hb_000008_230--Hb_001769_020 Hb_012340_020 Hb_012340_020 Hb_000008_230--Hb_012340_020 Hb_002344_090 Hb_002344_090 Hb_000008_230--Hb_002344_090 Hb_000008_230--Hb_035947_010 Hb_002374_440 Hb_002374_440 Hb_000008_230--Hb_002374_440 Hb_099698_010 Hb_099698_010 Hb_004712_110--Hb_099698_010 Hb_000040_050 Hb_000040_050 Hb_004712_110--Hb_000040_050 Hb_000173_210 Hb_000173_210 Hb_004712_110--Hb_000173_210 Hb_005228_120 Hb_005228_120 Hb_004712_110--Hb_005228_120 Hb_001534_070 Hb_001534_070 Hb_004712_110--Hb_001534_070 Hb_000940_040 Hb_000940_040 Hb_004712_110--Hb_000940_040 Hb_003125_140--Hb_000580_130 Hb_007645_120 Hb_007645_120 Hb_003125_140--Hb_007645_120 Hb_000120_570 Hb_000120_570 Hb_003125_140--Hb_000120_570 Hb_156144_030 Hb_156144_030 Hb_003125_140--Hb_156144_030 Hb_000265_220 Hb_000265_220 Hb_003125_140--Hb_000265_220 Hb_002965_030 Hb_002965_030 Hb_003125_140--Hb_002965_030 Hb_000206_130--Hb_012340_020 Hb_000206_130--Hb_001534_070 Hb_003688_200 Hb_003688_200 Hb_000206_130--Hb_003688_200 Hb_000206_130--Hb_002374_440 Hb_182807_020 Hb_182807_020 Hb_000206_130--Hb_182807_020 Hb_006816_120 Hb_006816_120 Hb_000206_130--Hb_006816_120 Hb_000580_130--Hb_000120_570 Hb_000580_130--Hb_001534_070 Hb_001922_130 Hb_001922_130 Hb_000580_130--Hb_001922_130 Hb_001703_130 Hb_001703_130 Hb_000580_130--Hb_001703_130 Hb_063409_020 Hb_063409_020 Hb_000580_130--Hb_063409_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.55786 4.72779 4.66657 1.79166 32.2283 5.6988
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.45498 1.99348 0.955024 1.48244 2.12365

CAGE analysis