Hb_085600_010

Information

Type -
Description -
Location Contig85600: 2680-3549
Sequence    

Annotation

kegg
ID tcc:TCM_021110
description Peroxidase superfamily protein
nr
ID XP_012069910.1
description PREDICTED: peroxidase 24-like [Jatropha curcas]
swissprot
ID Q9ZV04
description Peroxidase 24 OS=Arabidopsis thaliana GN=PER24 PE=2 SV=1
trembl
ID A0A067L7G4
description Peroxidase OS=Jatropha curcas GN=JCGZ_02037 PE=3 SV=1
Gene Ontology
ID GO:0004601
description peroxidase 3-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_085600_010 0.0 - - PREDICTED: peroxidase 24-like [Jatropha curcas]
2 Hb_001242_170 0.0163603822 - - conserved hypothetical protein [Ricinus communis]
3 Hb_180864_010 0.0342676579 - - hypothetical protein B456_010G097000 [Gossypium raimondii]
4 Hb_000984_280 0.034322119 - - PREDICTED: EPIDERMAL PATTERNING FACTOR-like protein 2 [Jatropha curcas]
5 Hb_000504_060 0.0537092699 - - Cell division cycle protein cdt2, putative [Ricinus communis]
6 Hb_002025_280 0.05863216 - - PREDICTED: uncharacterized protein LOC105634201 [Jatropha curcas]
7 Hb_002766_070 0.0595701805 transcription factor TF Family: MYB hypothetical protein JCGZ_17894 [Jatropha curcas]
8 Hb_000732_200 0.0669109668 - - conserved hypothetical protein [Ricinus communis]
9 Hb_000531_010 0.0776067365 transcription factor TF Family: G2-like hypothetical protein POPTR_0018s14830g [Populus trichocarpa]
10 Hb_000617_160 0.0814517993 - - -
11 Hb_002217_400 0.0862538208 - - polynucleotidyl transferase, ribonuclease H-like protein [Arabidopsis thaliana]
12 Hb_138585_070 0.0882601549 - - conserved hypothetical protein [Ricinus communis]
13 Hb_003082_090 0.0927315068 - - hypothetical protein POPTR_0013s099451g, partial [Populus trichocarpa]
14 Hb_002759_200 0.0938443382 - - PREDICTED: IAA-amino acid hydrolase ILR1-like 2 [Jatropha curcas]
15 Hb_000028_450 0.0955207805 - - PREDICTED: monoglyceride lipase-like [Jatropha curcas]
16 Hb_004598_020 0.1003389666 transcription factor TF Family: ERF Transcriptional factor TINY, putative [Ricinus communis]
17 Hb_033312_100 0.1031569814 - - -
18 Hb_005357_040 0.1050840234 - - gibberellin 20-oxidase, putative [Ricinus communis]
19 Hb_059502_010 0.1096688029 - - PREDICTED: probable 2-oxoglutarate/Fe(II)-dependent dioxygenase [Jatropha curcas]
20 Hb_001052_020 0.1249950297 - - hypothetical protein JCGZ_26487 [Jatropha curcas]

Gene co-expression network

sample Hb_085600_010 Hb_085600_010 Hb_001242_170 Hb_001242_170 Hb_085600_010--Hb_001242_170 Hb_180864_010 Hb_180864_010 Hb_085600_010--Hb_180864_010 Hb_000984_280 Hb_000984_280 Hb_085600_010--Hb_000984_280 Hb_000504_060 Hb_000504_060 Hb_085600_010--Hb_000504_060 Hb_002025_280 Hb_002025_280 Hb_085600_010--Hb_002025_280 Hb_002766_070 Hb_002766_070 Hb_085600_010--Hb_002766_070 Hb_001242_170--Hb_180864_010 Hb_001242_170--Hb_000984_280 Hb_000732_200 Hb_000732_200 Hb_001242_170--Hb_000732_200 Hb_001242_170--Hb_000504_060 Hb_000617_160 Hb_000617_160 Hb_001242_170--Hb_000617_160 Hb_180864_010--Hb_000984_280 Hb_180864_010--Hb_000732_200 Hb_004598_020 Hb_004598_020 Hb_180864_010--Hb_004598_020 Hb_003082_090 Hb_003082_090 Hb_180864_010--Hb_003082_090 Hb_000984_280--Hb_000732_200 Hb_000984_280--Hb_000504_060 Hb_000984_280--Hb_000617_160 Hb_002759_200 Hb_002759_200 Hb_000504_060--Hb_002759_200 Hb_000504_060--Hb_000732_200 Hb_000504_060--Hb_000617_160 Hb_002025_280--Hb_002766_070 Hb_033312_100 Hb_033312_100 Hb_002025_280--Hb_033312_100 Hb_000531_010 Hb_000531_010 Hb_002025_280--Hb_000531_010 Hb_002025_280--Hb_001242_170 Hb_002025_280--Hb_180864_010 Hb_002766_070--Hb_033312_100 Hb_002766_070--Hb_000531_010 Hb_002766_070--Hb_001242_170 Hb_002766_070--Hb_180864_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.117767 0.172808 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0371354 0

CAGE analysis