Hb_085682_010

Information

Type -
Description -
Location Contig85682: 2219-2647
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_085682_010 0.0 - - -
2 Hb_000329_120 0.0364277004 - - 21 kDa protein precursor, putative [Ricinus communis]
3 Hb_158001_010 0.0390605208 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase RKS1, partial [Populus euphratica]
4 Hb_009233_020 0.0397095108 - - PREDICTED: 3-ketoacyl-CoA synthase 12 [Jatropha curcas]
5 Hb_004837_010 0.0555069601 - - PREDICTED: aldehyde dehydrogenase family 3 member F1-like [Jatropha curcas]
6 Hb_001507_060 0.0578799162 - - translation initiation factor eif-2b gamma subunit, putative [Ricinus communis]
7 Hb_000077_020 0.0635455051 - - conserved hypothetical protein [Ricinus communis]
8 Hb_000179_010 0.0641608821 - - PREDICTED: alkane hydroxylase MAH1-like [Jatropha curcas]
9 Hb_009225_060 0.06416254 - - PREDICTED: myosin heavy chain kinase B-like [Populus euphratica]
10 Hb_001295_070 0.0654654144 - - PREDICTED: putative UPF0481 protein At3g02645 [Jatropha curcas]
11 Hb_001232_070 0.0665752281 - - conserved hypothetical protein [Ricinus communis]
12 Hb_004807_010 0.0668358428 - - PREDICTED: auxin-induced protein 15A-like [Jatropha curcas]
13 Hb_003734_070 0.0718278313 - - chlorophyll A/B binding protein, putative [Ricinus communis]
14 Hb_000046_400 0.0747541721 - - conserved hypothetical protein [Ricinus communis]
15 Hb_005743_050 0.0753285641 - - unnamed protein product [Coffea canephora]
16 Hb_000987_030 0.0755861595 transcription factor TF Family: BES1 hypothetical protein POPTR_0016s13350g [Populus trichocarpa]
17 Hb_007317_030 0.0757901211 - - -
18 Hb_000844_080 0.077334755 transcription factor TF Family: G2-like hypothetical protein RCOM_1592640 [Ricinus communis]
19 Hb_003913_120 0.0777837002 transcription factor TF Family: MYB hypothetical protein POPTR_0015s09430g [Populus trichocarpa]
20 Hb_002391_340 0.0784272047 - - RNA polymerase II largest subunit [Liriodendron tulipifera]

Gene co-expression network

sample Hb_085682_010 Hb_085682_010 Hb_000329_120 Hb_000329_120 Hb_085682_010--Hb_000329_120 Hb_158001_010 Hb_158001_010 Hb_085682_010--Hb_158001_010 Hb_009233_020 Hb_009233_020 Hb_085682_010--Hb_009233_020 Hb_004837_010 Hb_004837_010 Hb_085682_010--Hb_004837_010 Hb_001507_060 Hb_001507_060 Hb_085682_010--Hb_001507_060 Hb_000077_020 Hb_000077_020 Hb_085682_010--Hb_000077_020 Hb_001232_070 Hb_001232_070 Hb_000329_120--Hb_001232_070 Hb_002391_340 Hb_002391_340 Hb_000329_120--Hb_002391_340 Hb_006483_040 Hb_006483_040 Hb_000329_120--Hb_006483_040 Hb_004807_010 Hb_004807_010 Hb_000329_120--Hb_004807_010 Hb_005839_040 Hb_005839_040 Hb_000329_120--Hb_005839_040 Hb_000987_030 Hb_000987_030 Hb_158001_010--Hb_000987_030 Hb_005743_050 Hb_005743_050 Hb_158001_010--Hb_005743_050 Hb_001295_070 Hb_001295_070 Hb_158001_010--Hb_001295_070 Hb_000179_010 Hb_000179_010 Hb_158001_010--Hb_000179_010 Hb_158001_010--Hb_001507_060 Hb_009225_060 Hb_009225_060 Hb_009233_020--Hb_009225_060 Hb_009233_020--Hb_000077_020 Hb_004880_020 Hb_004880_020 Hb_009233_020--Hb_004880_020 Hb_003734_070 Hb_003734_070 Hb_009233_020--Hb_003734_070 Hb_009233_020--Hb_000329_120 Hb_004837_010--Hb_000179_010 Hb_004032_400 Hb_004032_400 Hb_004837_010--Hb_004032_400 Hb_001307_050 Hb_001307_050 Hb_004837_010--Hb_001307_050 Hb_004837_010--Hb_158001_010 Hb_146255_030 Hb_146255_030 Hb_004837_010--Hb_146255_030 Hb_001507_060--Hb_001295_070 Hb_000844_080 Hb_000844_080 Hb_001507_060--Hb_000844_080 Hb_001775_020 Hb_001775_020 Hb_001507_060--Hb_001775_020 Hb_002328_080 Hb_002328_080 Hb_001507_060--Hb_002328_080 Hb_000139_170 Hb_000139_170 Hb_001507_060--Hb_000139_170 Hb_009707_020 Hb_009707_020 Hb_001507_060--Hb_009707_020 Hb_000077_020--Hb_004880_020 Hb_000077_020--Hb_009225_060 Hb_000077_020--Hb_003734_070 Hb_068580_010 Hb_068580_010 Hb_000077_020--Hb_068580_010 Hb_000077_020--Hb_001507_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.123955 0.120289 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0.246791

CAGE analysis