Hb_085781_020

Information

Type -
Description -
Location Contig85781: 3489-6671
Sequence    

Annotation

kegg
ID rcu:RCOM_0603610
description GTP-binding protein alpha subunit, gna, putative
nr
ID XP_012079134.1
description PREDICTED: extra-large guanine nucleotide-binding protein 1 [Jatropha curcas]
swissprot
ID O80462
description Extra-large guanine nucleotide-binding protein 1 OS=Arabidopsis thaliana GN=XLG1 PE=1 SV=2
trembl
ID A0A067KHW0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_12306 PE=4 SV=1
Gene Ontology
ID GO:0003924
description extra-large guanine nucleotide-binding protein 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_60662: 3576-3695 , PASA_asmbl_60663: 4597-5814
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_085781_020 0.0 - - PREDICTED: extra-large guanine nucleotide-binding protein 1 [Jatropha curcas]
2 Hb_071130_010 0.0509641212 - - PREDICTED: E3 ubiquitin-protein ligase UPL1 isoform X1 [Jatropha curcas]
3 Hb_000230_260 0.0621025923 - - PREDICTED: putative E3 ubiquitin-protein ligase RF298 [Jatropha curcas]
4 Hb_000140_210 0.0638534914 - - sec10, putative [Ricinus communis]
5 Hb_000066_170 0.0674078355 - - PREDICTED: phosphatidylinositol-3-phosphatase myotubularin-1 isoform X2 [Jatropha curcas]
6 Hb_003060_060 0.0678609202 - - PREDICTED: protein transport protein SEC31 homolog B [Jatropha curcas]
7 Hb_002639_080 0.0680533235 - - PREDICTED: large proline-rich protein BAG6 isoform X1 [Jatropha curcas]
8 Hb_000556_220 0.0681627787 - - PREDICTED: brefeldin A-inhibited guanine nucleotide-exchange protein 2-like [Jatropha curcas]
9 Hb_000069_120 0.0702786436 - - PREDICTED: uncharacterized protein LOC105124742 isoform X1 [Populus euphratica]
10 Hb_041327_010 0.0704668755 - - PREDICTED: la-related protein 1A isoform X1 [Jatropha curcas]
11 Hb_017358_040 0.0722375577 - - PREDICTED: RNA-dependent RNA polymerase 6-like [Jatropha curcas]
12 Hb_000723_220 0.0726784902 - - PREDICTED: uncharacterized protein LOC105642234 [Jatropha curcas]
13 Hb_001188_020 0.0752479165 - - PREDICTED: E3 SUMO-protein ligase SIZ1 isoform X1 [Jatropha curcas]
14 Hb_001440_030 0.0780557693 - - PREDICTED: exocyst complex component SEC8 [Jatropha curcas]
15 Hb_000537_050 0.0785515886 - - AP-2 complex subunit beta-1, putative [Ricinus communis]
16 Hb_009296_040 0.0786728013 - - hypothetical protein L484_007435 [Morus notabilis]
17 Hb_004019_120 0.0789732953 - - PREDICTED: conserved oligomeric Golgi complex subunit 1 [Jatropha curcas]
18 Hb_000028_390 0.0823799837 - - PREDICTED: extra-large guanine nucleotide-binding protein 3-like [Jatropha curcas]
19 Hb_000592_030 0.0875490106 - - PREDICTED: uncharacterized protein LOC100853969 isoform X1 [Vitis vinifera]
20 Hb_011016_050 0.0891454144 - - PREDICTED: probable E3 ubiquitin-protein ligase ARI7 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_085781_020 Hb_085781_020 Hb_071130_010 Hb_071130_010 Hb_085781_020--Hb_071130_010 Hb_000230_260 Hb_000230_260 Hb_085781_020--Hb_000230_260 Hb_000140_210 Hb_000140_210 Hb_085781_020--Hb_000140_210 Hb_000066_170 Hb_000066_170 Hb_085781_020--Hb_000066_170 Hb_003060_060 Hb_003060_060 Hb_085781_020--Hb_003060_060 Hb_002639_080 Hb_002639_080 Hb_085781_020--Hb_002639_080 Hb_071130_010--Hb_000230_260 Hb_000069_120 Hb_000069_120 Hb_071130_010--Hb_000069_120 Hb_071130_010--Hb_002639_080 Hb_001188_020 Hb_001188_020 Hb_071130_010--Hb_001188_020 Hb_041327_010 Hb_041327_010 Hb_071130_010--Hb_041327_010 Hb_000230_260--Hb_000069_120 Hb_000230_260--Hb_041327_010 Hb_000230_260--Hb_003060_060 Hb_000412_010 Hb_000412_010 Hb_000230_260--Hb_000412_010 Hb_003544_050 Hb_003544_050 Hb_000140_210--Hb_003544_050 Hb_009296_040 Hb_009296_040 Hb_000140_210--Hb_009296_040 Hb_011016_050 Hb_011016_050 Hb_000140_210--Hb_011016_050 Hb_000140_210--Hb_000066_170 Hb_000028_390 Hb_000028_390 Hb_000140_210--Hb_000028_390 Hb_001440_030 Hb_001440_030 Hb_000066_170--Hb_001440_030 Hb_000592_030 Hb_000592_030 Hb_000066_170--Hb_000592_030 Hb_000537_050 Hb_000537_050 Hb_000066_170--Hb_000537_050 Hb_000066_170--Hb_009296_040 Hb_003060_060--Hb_000412_010 Hb_000395_070 Hb_000395_070 Hb_003060_060--Hb_000395_070 Hb_001529_040 Hb_001529_040 Hb_003060_060--Hb_001529_040 Hb_003060_060--Hb_041327_010 Hb_002639_080--Hb_001188_020 Hb_002639_080--Hb_041327_010 Hb_004143_160 Hb_004143_160 Hb_002639_080--Hb_004143_160 Hb_002639_080--Hb_000069_120 Hb_007632_010 Hb_007632_010 Hb_002639_080--Hb_007632_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.19745 8.86104 3.47751 8.64231 6.66014 10.6178
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.10012 3.78018 8.14257 12.0812 8.17896

CAGE analysis