Hb_085793_010

Information

Type -
Description -
Location Contig85793: 24-1113
Sequence    

Annotation

kegg
ID tcc:TCM_045983
description Gag protease polyprotein-like protein
nr
ID XP_012072702.1
description PREDICTED: uncharacterized protein LOC105634453 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID S1S3V9
description Gag protease polyprotein-like protein OS=Theobroma cacao GN=TCM_045983 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_085793_010 0.0 - - PREDICTED: uncharacterized protein LOC105634453 [Jatropha curcas]
2 Hb_003205_040 0.0022415055 - - epoxide hydrolase, putative [Ricinus communis]
3 Hb_000043_040 0.0446775525 - - CTV.19 [Citrus trifoliata]
4 Hb_066206_010 0.103619307 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
5 Hb_165100_010 0.1130544578 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC103696607 [Phoenix dactylifera]
6 Hb_000574_290 0.120216535 - - PREDICTED: uncharacterized protein LOC105629978 [Jatropha curcas]
7 Hb_028248_010 0.2184673312 - - polyprotein [Oryza australiensis]
8 Hb_020250_020 0.2531683357 - - PREDICTED: uncharacterized protein LOC105775392, partial [Gossypium raimondii]
9 Hb_011537_090 0.2649019087 - - hypothetical protein B456_009G071100 [Gossypium raimondii]
10 Hb_097889_010 0.2649115944 - - PREDICTED: uncharacterized protein LOC102584707 [Solanum tuberosum]
11 Hb_009188_010 0.264918229 - - PREDICTED: uncharacterized protein LOC105631113 [Jatropha curcas]
12 Hb_008976_010 0.2649378378 - - -
13 Hb_000710_120 0.2649445823 - - hypothetical protein JCGZ_01844 [Jatropha curcas]
14 Hb_001309_030 0.2649493103 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
15 Hb_004019_100 0.2649519413 - - PREDICTED: uncharacterized protein LOC105797448 [Gossypium raimondii]
16 Hb_001972_020 0.2649674343 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
17 Hb_001817_190 0.2649711745 - - hypothetical protein PRUPE_ppa015000mg [Prunus persica]
18 Hb_010783_010 0.2649736637 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
19 Hb_124540_020 0.2651425957 - - polyprotein [Citrus endogenous pararetrovirus]
20 Hb_090778_010 0.2651935376 - - PREDICTED: uncharacterized protein LOC105764482 [Gossypium raimondii]

Gene co-expression network

sample Hb_085793_010 Hb_085793_010 Hb_003205_040 Hb_003205_040 Hb_085793_010--Hb_003205_040 Hb_000043_040 Hb_000043_040 Hb_085793_010--Hb_000043_040 Hb_066206_010 Hb_066206_010 Hb_085793_010--Hb_066206_010 Hb_165100_010 Hb_165100_010 Hb_085793_010--Hb_165100_010 Hb_000574_290 Hb_000574_290 Hb_085793_010--Hb_000574_290 Hb_028248_010 Hb_028248_010 Hb_085793_010--Hb_028248_010 Hb_003205_040--Hb_000043_040 Hb_003205_040--Hb_066206_010 Hb_003205_040--Hb_165100_010 Hb_003205_040--Hb_000574_290 Hb_003205_040--Hb_028248_010 Hb_000043_040--Hb_066206_010 Hb_000043_040--Hb_000574_290 Hb_000043_040--Hb_165100_010 Hb_000043_040--Hb_028248_010 Hb_066206_010--Hb_000574_290 Hb_066206_010--Hb_165100_010 Hb_066206_010--Hb_028248_010 Hb_165100_010--Hb_000574_290 Hb_165100_010--Hb_028248_010 Hb_000574_290--Hb_028248_010 Hb_011716_120 Hb_011716_120 Hb_028248_010--Hb_011716_120 Hb_017225_010 Hb_017225_010 Hb_028248_010--Hb_017225_010 Hb_011987_010 Hb_011987_010 Hb_028248_010--Hb_011987_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0 0.0211295 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0152356 0.0777964

CAGE analysis