Hb_085972_010

Information

Type transcription factor
Description TF Family: NAC
Location Contig85972: 495-1198
Sequence    

Annotation

kegg
ID rcu:RCOM_1341240
description transcription factor, putative
nr
ID AGL39722.1
description NAC transcription factor 066 [Jatropha curcas]
swissprot
ID O81913
description NAC domain-containing protein 4 OS=Arabidopsis thaliana GN=NAC004 PE=2 SV=2
trembl
ID R4N5R9
description NAC transcription factor 066 OS=Jatropha curcas PE=4 SV=1
Gene Ontology
ID GO:0005634
description nac domain-containing protein 4-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_085972_010 0.0 transcription factor TF Family: NAC NAC transcription factor 066 [Jatropha curcas]
2 Hb_006643_020 0.1236883655 - - PREDICTED: uncharacterized protein LOC105628407 [Jatropha curcas]
3 Hb_001911_040 0.1252630865 - - PREDICTED: uncharacterized protein LOC105628407 [Jatropha curcas]
4 Hb_001829_040 0.1272724424 - - PREDICTED: protein transport protein SEC13 homolog B [Jatropha curcas]
5 Hb_000022_050 0.1279759897 - - PREDICTED: retinol dehydrogenase 11-like isoform X2 [Glycine max]
6 Hb_001396_110 0.1291425138 - - DNA primase large subunit, putative [Ricinus communis]
7 Hb_005686_120 0.1327149868 - - -
8 Hb_011671_480 0.1354593641 - - conserved hypothetical protein [Ricinus communis]
9 Hb_090158_010 0.1370081935 - - hypothetical protein RCOM_1968400 [Ricinus communis]
10 Hb_000510_300 0.1388060725 - - PREDICTED: NADH dehydrogenase [ubiquinone] flavoprotein 2, mitochondrial [Jatropha curcas]
11 Hb_004117_110 0.1392742682 - - hypothetical protein POPTR_0016s14420g [Populus trichocarpa]
12 Hb_000676_080 0.1398441007 - - PREDICTED: uncharacterized WD repeat-containing protein C17D11.16 [Jatropha curcas]
13 Hb_000167_080 0.1400209794 - - PREDICTED: uncharacterized protein LOC105641103 [Jatropha curcas]
14 Hb_129672_010 0.1437936813 - - PREDICTED: signal peptidase complex subunit 3B [Jatropha curcas]
15 Hb_012760_130 0.1445518242 - - PREDICTED: uncharacterized protein LOC105647093 [Jatropha curcas]
16 Hb_000783_010 0.1448530155 - - PREDICTED: ras-related protein RABF1 [Jatropha curcas]
17 Hb_002133_020 0.1475457972 - - conserved hypothetical protein [Ricinus communis]
18 Hb_000962_030 0.1481355709 - - PREDICTED: metal tolerance protein C2 [Jatropha curcas]
19 Hb_059480_010 0.1486105764 - - Alpha-1,4-glucan-protein synthase [UDP-forming], putative [Ricinus communis]
20 Hb_001322_040 0.1489232197 - - -

Gene co-expression network

sample Hb_085972_010 Hb_085972_010 Hb_006643_020 Hb_006643_020 Hb_085972_010--Hb_006643_020 Hb_001911_040 Hb_001911_040 Hb_085972_010--Hb_001911_040 Hb_001829_040 Hb_001829_040 Hb_085972_010--Hb_001829_040 Hb_000022_050 Hb_000022_050 Hb_085972_010--Hb_000022_050 Hb_001396_110 Hb_001396_110 Hb_085972_010--Hb_001396_110 Hb_005686_120 Hb_005686_120 Hb_085972_010--Hb_005686_120 Hb_006060_020 Hb_006060_020 Hb_006643_020--Hb_006060_020 Hb_006643_020--Hb_001396_110 Hb_000215_320 Hb_000215_320 Hb_006643_020--Hb_000215_320 Hb_006643_020--Hb_001911_040 Hb_011360_050 Hb_011360_050 Hb_006643_020--Hb_011360_050 Hb_011671_480 Hb_011671_480 Hb_001911_040--Hb_011671_480 Hb_009545_090 Hb_009545_090 Hb_001911_040--Hb_009545_090 Hb_000538_240 Hb_000538_240 Hb_001911_040--Hb_000538_240 Hb_000743_030 Hb_000743_030 Hb_001911_040--Hb_000743_030 Hb_001911_040--Hb_001829_040 Hb_000357_110 Hb_000357_110 Hb_001911_040--Hb_000357_110 Hb_001829_040--Hb_011671_480 Hb_001829_040--Hb_000022_050 Hb_002983_080 Hb_002983_080 Hb_001829_040--Hb_002983_080 Hb_000260_720 Hb_000260_720 Hb_001829_040--Hb_000260_720 Hb_001829_040--Hb_005686_120 Hb_000261_230 Hb_000261_230 Hb_001829_040--Hb_000261_230 Hb_000022_050--Hb_000261_230 Hb_005797_010 Hb_005797_010 Hb_000022_050--Hb_005797_010 Hb_000009_400 Hb_000009_400 Hb_000022_050--Hb_000009_400 Hb_012322_020 Hb_012322_020 Hb_000022_050--Hb_012322_020 Hb_003929_170 Hb_003929_170 Hb_000022_050--Hb_003929_170 Hb_187679_010 Hb_187679_010 Hb_001396_110--Hb_187679_010 Hb_004450_050 Hb_004450_050 Hb_001396_110--Hb_004450_050 Hb_008226_060 Hb_008226_060 Hb_001396_110--Hb_008226_060 Hb_001396_110--Hb_000357_110 Hb_005686_120--Hb_011671_480 Hb_130613_010 Hb_130613_010 Hb_005686_120--Hb_130613_010 Hb_005686_120--Hb_000260_720 Hb_005686_120--Hb_002983_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.962 1.66046 1.59179 3.65185 0.682563 2.44726
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.12267 2.03851 0.79706 1.79821 0.528427

CAGE analysis