Hb_086077_020

Information

Type -
Description -
Location Contig86077: 29394-34962
Sequence    

Annotation

kegg
ID pvu:PHAVU_001G054900g
description hypothetical protein
nr
ID XP_007161253.1
description hypothetical protein PHAVU_001G054900g [Phaseolus vulgaris]
swissprot
ID -
description -
trembl
ID V7CSU6
description Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_001G054900g PE=4 SV=1
Gene Ontology
ID GO:0051213
description probable 2-oxoglutarate-dependent dioxygenase aop1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_086077_020 0.0 - - hypothetical protein PHAVU_001G054900g [Phaseolus vulgaris]
2 Hb_004440_080 0.1143290507 - - PREDICTED: syntaxin-112 [Populus euphratica]
3 Hb_000012_460 0.1986059389 - - unknown [Populus trichocarpa]
4 Hb_000258_340 0.2194874795 - - PREDICTED: pentatricopeptide repeat-containing protein At1g26900, mitochondrial [Jatropha curcas]
5 Hb_010977_010 0.2408175499 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
6 Hb_000772_040 0.2513131142 - - PREDICTED: uncharacterized protein LOC105036273 [Elaeis guineensis]
7 Hb_133820_010 0.2515051509 - - MULTISPECIES: hypothetical protein, partial [Pseudomonas fluorescens group]
8 Hb_001172_090 0.2644531587 - - PREDICTED: uncharacterized protein LOC104094989 [Nicotiana tomentosiformis]
9 Hb_007426_160 0.2660140668 - - -
10 Hb_004650_060 0.2670314261 - - putative retrotransposon protein [Phyllostachys edulis]
11 Hb_002888_020 0.2721738481 - - -
12 Hb_000154_010 0.2741991495 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
13 Hb_000052_020 0.2759965784 desease resistance Gene Name: ABC_tran PREDICTED: LOW QUALITY PROTEIN: ABC transporter G family member 2-like [Jatropha curcas]
14 Hb_006132_030 0.2796762839 - - hypothetical protein CARUB_v10012126mg, partial [Capsella rubella]
15 Hb_001952_040 0.2873148165 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
16 Hb_005344_030 0.2900579496 - - PREDICTED: UDP-glycosyltransferase 74F2-like [Jatropha curcas]
17 Hb_019656_010 0.2956403466 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
18 Hb_039262_010 0.2970656272 - - PREDICTED: uncharacterized protein LOC105636491 [Jatropha curcas]
19 Hb_000932_100 0.2973025144 - - -
20 Hb_000160_320 0.2994278418 - - hypothetical protein POPTR_0004s08730g [Populus trichocarpa]

Gene co-expression network

sample Hb_086077_020 Hb_086077_020 Hb_004440_080 Hb_004440_080 Hb_086077_020--Hb_004440_080 Hb_000012_460 Hb_000012_460 Hb_086077_020--Hb_000012_460 Hb_000258_340 Hb_000258_340 Hb_086077_020--Hb_000258_340 Hb_010977_010 Hb_010977_010 Hb_086077_020--Hb_010977_010 Hb_000772_040 Hb_000772_040 Hb_086077_020--Hb_000772_040 Hb_133820_010 Hb_133820_010 Hb_086077_020--Hb_133820_010 Hb_004440_080--Hb_000012_460 Hb_004440_080--Hb_000258_340 Hb_002888_020 Hb_002888_020 Hb_004440_080--Hb_002888_020 Hb_002602_020 Hb_002602_020 Hb_004440_080--Hb_002602_020 Hb_004440_080--Hb_010977_010 Hb_007426_160 Hb_007426_160 Hb_000012_460--Hb_007426_160 Hb_000012_460--Hb_000772_040 Hb_000932_100 Hb_000932_100 Hb_000012_460--Hb_000932_100 Hb_001006_260 Hb_001006_260 Hb_000012_460--Hb_001006_260 Hb_004448_020 Hb_004448_020 Hb_000012_460--Hb_004448_020 Hb_001172_090 Hb_001172_090 Hb_000258_340--Hb_001172_090 Hb_019656_010 Hb_019656_010 Hb_000258_340--Hb_019656_010 Hb_005372_020 Hb_005372_020 Hb_000258_340--Hb_005372_020 Hb_000258_340--Hb_010977_010 Hb_010977_010--Hb_001172_090 Hb_004650_060 Hb_004650_060 Hb_010977_010--Hb_004650_060 Hb_010977_010--Hb_019656_010 Hb_010977_010--Hb_133820_010 Hb_000399_010 Hb_000399_010 Hb_000772_040--Hb_000399_010 Hb_001703_120 Hb_001703_120 Hb_000772_040--Hb_001703_120 Hb_000865_060 Hb_000865_060 Hb_000772_040--Hb_000865_060 Hb_001294_010 Hb_001294_010 Hb_000772_040--Hb_001294_010 Hb_000160_320 Hb_000160_320 Hb_000772_040--Hb_000160_320 Hb_131102_010 Hb_131102_010 Hb_133820_010--Hb_131102_010 Hb_122556_010 Hb_122556_010 Hb_133820_010--Hb_122556_010 Hb_000154_010 Hb_000154_010 Hb_133820_010--Hb_000154_010 Hb_006132_030 Hb_006132_030 Hb_133820_010--Hb_006132_030 Hb_011484_010 Hb_011484_010 Hb_133820_010--Hb_011484_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.11354 0 0 0 0.0302808 0.285836
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.297585 0.116983 0.315182 0.0474772 0.699098

CAGE analysis