Hb_086085_020

Information

Type -
Description -
Location Contig86085: 24071-39024
Sequence    

Annotation

kegg
ID tcc:TCM_003147
description Non-imprinted in Prader-Willi/Angelman syndrome region protein isoform 1
nr
ID XP_007049907.1
description Non-imprinted in Prader-Willi/Angelman syndrome region protein isoform 3 [Theobroma cacao]
swissprot
ID Q8GWX2
description Probable magnesium transporter NIPA6 OS=Arabidopsis thaliana GN=At2g21120 PE=2 SV=1
trembl
ID A0A061DML8
description Non-imprinted in Prader-Willi/Angelman syndrome region protein isoform 3 OS=Theobroma cacao GN=TCM_003147 PE=4 SV=1
Gene Ontology
ID GO:0016021
description probable magnesium transporter nipa6

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_60810: 24114-52394
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_086085_020 0.0 - - Non-imprinted in Prader-Willi/Angelman syndrome region protein isoform 3 [Theobroma cacao]
2 Hb_000310_090 0.0724986901 - - 3-oxoacyl-[acyl-carrier-protein] synthase 3 A, chloroplastic [Jatropha curcas]
3 Hb_003929_270 0.0794634478 - - S-adenosylmethionine-dependent methyltransferase, putative [Ricinus communis]
4 Hb_000141_080 0.0796477007 - - PREDICTED: NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 8, mitochondrial isoform X1 [Brassica rapa]
5 Hb_008970_030 0.0814880768 - - arf gtpase-activating protein, putative [Ricinus communis]
6 Hb_002289_080 0.0829744202 - - hypothetical protein POPTR_0016s05590g [Populus trichocarpa]
7 Hb_000768_210 0.0873981817 - - PREDICTED: uncharacterized protein LOC105632522 [Jatropha curcas]
8 Hb_001366_370 0.0875012366 - - PREDICTED: aarF domain-containing protein kinase 4 isoform X1 [Jatropha curcas]
9 Hb_025098_010 0.0888622891 - - PREDICTED: protoheme IX farnesyltransferase, mitochondrial isoform X2 [Jatropha curcas]
10 Hb_006618_120 0.0909662893 - - PREDICTED: uncharacterized protein LOC105645969 [Jatropha curcas]
11 Hb_004157_100 0.0916871016 - - PREDICTED: putative nuclease HARBI1 [Jatropha curcas]
12 Hb_062537_010 0.0919079916 - - hypothetical protein JCGZ_13884 [Jatropha curcas]
13 Hb_000200_020 0.0925791871 - - PREDICTED: uncharacterized protein LOC105636907 [Jatropha curcas]
14 Hb_001168_020 0.0930337451 - - PREDICTED: translation initiation factor eIF-2B subunit gamma [Jatropha curcas]
15 Hb_002518_210 0.0933541698 - - PREDICTED: mitochondrial uncoupling protein 2 [Jatropha curcas]
16 Hb_000140_280 0.0934625801 - - hypothetical protein B456_001G157900 [Gossypium raimondii]
17 Hb_000167_080 0.0934864453 - - PREDICTED: uncharacterized protein LOC105641103 [Jatropha curcas]
18 Hb_000300_630 0.0939648786 - - PREDICTED: 5'-adenylylsulfate reductase-like 7 [Jatropha curcas]
19 Hb_000159_090 0.0944031569 - - hypothetical protein POPTR_0015s153201g, partial [Populus trichocarpa]
20 Hb_000107_230 0.0947186462 - - unknown [Medicago truncatula]

Gene co-expression network

sample Hb_086085_020 Hb_086085_020 Hb_000310_090 Hb_000310_090 Hb_086085_020--Hb_000310_090 Hb_003929_270 Hb_003929_270 Hb_086085_020--Hb_003929_270 Hb_000141_080 Hb_000141_080 Hb_086085_020--Hb_000141_080 Hb_008970_030 Hb_008970_030 Hb_086085_020--Hb_008970_030 Hb_002289_080 Hb_002289_080 Hb_086085_020--Hb_002289_080 Hb_000768_210 Hb_000768_210 Hb_086085_020--Hb_000768_210 Hb_001168_020 Hb_001168_020 Hb_000310_090--Hb_001168_020 Hb_001189_070 Hb_001189_070 Hb_000310_090--Hb_001189_070 Hb_025098_010 Hb_025098_010 Hb_000310_090--Hb_025098_010 Hb_000310_090--Hb_002289_080 Hb_001314_050 Hb_001314_050 Hb_000310_090--Hb_001314_050 Hb_002053_140 Hb_002053_140 Hb_003929_270--Hb_002053_140 Hb_003929_270--Hb_000141_080 Hb_000735_110 Hb_000735_110 Hb_003929_270--Hb_000735_110 Hb_030736_020 Hb_030736_020 Hb_003929_270--Hb_030736_020 Hb_006618_120 Hb_006618_120 Hb_003929_270--Hb_006618_120 Hb_000141_080--Hb_002053_140 Hb_000141_080--Hb_030736_020 Hb_001366_370 Hb_001366_370 Hb_000141_080--Hb_001366_370 Hb_009787_030 Hb_009787_030 Hb_000141_080--Hb_009787_030 Hb_000141_080--Hb_000735_110 Hb_001427_160 Hb_001427_160 Hb_000141_080--Hb_001427_160 Hb_012498_010 Hb_012498_010 Hb_008970_030--Hb_012498_010 Hb_000159_090 Hb_000159_090 Hb_008970_030--Hb_000159_090 Hb_007481_010 Hb_007481_010 Hb_008970_030--Hb_007481_010 Hb_003025_100 Hb_003025_100 Hb_008970_030--Hb_003025_100 Hb_000192_080 Hb_000192_080 Hb_008970_030--Hb_000192_080 Hb_013726_090 Hb_013726_090 Hb_008970_030--Hb_013726_090 Hb_002289_080--Hb_001168_020 Hb_005144_050 Hb_005144_050 Hb_002289_080--Hb_005144_050 Hb_025194_100 Hb_025194_100 Hb_002289_080--Hb_025194_100 Hb_006478_020 Hb_006478_020 Hb_002289_080--Hb_006478_020 Hb_002289_080--Hb_025098_010 Hb_002518_210 Hb_002518_210 Hb_000768_210--Hb_002518_210 Hb_000768_210--Hb_001366_370 Hb_000768_210--Hb_002053_140 Hb_001232_190 Hb_001232_190 Hb_000768_210--Hb_001232_190 Hb_024650_070 Hb_024650_070 Hb_000768_210--Hb_024650_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.30755 2.37919 4.6343 10.9098 3.19885 7.62174
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.44976 6.57395 5.35977 5.50082 5.31613

CAGE analysis