Hb_086122_010

Information

Type -
Description -
Location Contig86122: 1812-2283
Sequence    

Annotation

kegg
ID sita:101756613
description uncharacterized LOC101756613
nr
ID XP_012086823.1
description PREDICTED: immunoglobulin-like domain-containing receptor 1 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067L8L0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_01212 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_60825: 1847-2388
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_086122_010 0.0 - - PREDICTED: immunoglobulin-like domain-containing receptor 1 [Jatropha curcas]
2 Hb_000402_020 0.1138240024 - - PREDICTED: 2-phytyl-1,4-beta-naphthoquinone methyltransferase, chloroplastic isoform X1 [Jatropha curcas]
3 Hb_010578_030 0.1427208554 - - PREDICTED: sec-independent protein translocase protein TATA, chloroplastic [Jatropha curcas]
4 Hb_000189_130 0.1432891069 - - PREDICTED: sec-independent protein translocase protein TATA, chloroplastic [Jatropha curcas]
5 Hb_005618_080 0.1447520358 - - PREDICTED: protoporphyrinogen oxidase 1, chloroplastic [Jatropha curcas]
6 Hb_000212_250 0.1461759172 - - conserved hypothetical protein [Ricinus communis]
7 Hb_004117_040 0.1508745735 - - PREDICTED: uncharacterized protein LOC105638287 [Jatropha curcas]
8 Hb_000574_470 0.153423178 - - PREDICTED: chaperone protein dnaJ 1, mitochondrial isoform X1 [Jatropha curcas]
9 Hb_011114_020 0.154839381 - - PREDICTED: 50S ribosomal protein L12-1, chloroplastic-like [Jatropha curcas]
10 Hb_000018_140 0.1559348989 - - PREDICTED: uncharacterized protein LOC105638239 [Jatropha curcas]
11 Hb_004502_010 0.1560296168 - - hypothetical protein JCGZ_23576 [Jatropha curcas]
12 Hb_006130_020 0.1574077394 - - S-adenosylmethionine-dependent methyltransferase, putative [Ricinus communis]
13 Hb_008375_030 0.1581994887 - - PREDICTED: carbon catabolite repressor protein 4 homolog 4 isoform X1 [Populus euphratica]
14 Hb_000000_180 0.1612555625 - - PREDICTED: 30S ribosomal protein S9, chloroplastic-like [Populus euphratica]
15 Hb_009288_040 0.1615988624 - - PREDICTED: uncharacterized protein LOC105648677 [Jatropha curcas]
16 Hb_000181_060 0.1620816798 - - PREDICTED: 30S ribosomal protein S20, chloroplastic [Jatropha curcas]
17 Hb_003752_090 0.1639379294 - - chitinase, putative [Ricinus communis]
18 Hb_027445_100 0.1644830492 - - PREDICTED: probable monodehydroascorbate reductase, cytoplasmic isoform 2 [Jatropha curcas]
19 Hb_011476_030 0.1649282049 - - PREDICTED: uncharacterized protein LOC105632352 [Jatropha curcas]
20 Hb_003038_100 0.1657345238 - - PREDICTED: pheophytinase, chloroplastic [Jatropha curcas]

Gene co-expression network

sample Hb_086122_010 Hb_086122_010 Hb_000402_020 Hb_000402_020 Hb_086122_010--Hb_000402_020 Hb_010578_030 Hb_010578_030 Hb_086122_010--Hb_010578_030 Hb_000189_130 Hb_000189_130 Hb_086122_010--Hb_000189_130 Hb_005618_080 Hb_005618_080 Hb_086122_010--Hb_005618_080 Hb_000212_250 Hb_000212_250 Hb_086122_010--Hb_000212_250 Hb_004117_040 Hb_004117_040 Hb_086122_010--Hb_004117_040 Hb_000402_020--Hb_005618_080 Hb_005116_100 Hb_005116_100 Hb_000402_020--Hb_005116_100 Hb_001959_060 Hb_001959_060 Hb_000402_020--Hb_001959_060 Hb_003752_090 Hb_003752_090 Hb_000402_020--Hb_003752_090 Hb_006829_080 Hb_006829_080 Hb_000402_020--Hb_006829_080 Hb_000056_310 Hb_000056_310 Hb_000402_020--Hb_000056_310 Hb_031139_010 Hb_031139_010 Hb_010578_030--Hb_031139_010 Hb_000358_040 Hb_000358_040 Hb_010578_030--Hb_000358_040 Hb_000112_060 Hb_000112_060 Hb_010578_030--Hb_000112_060 Hb_010578_030--Hb_000402_020 Hb_000059_270 Hb_000059_270 Hb_010578_030--Hb_000059_270 Hb_000307_070 Hb_000307_070 Hb_000189_130--Hb_000307_070 Hb_001009_140 Hb_001009_140 Hb_000189_130--Hb_001009_140 Hb_000331_420 Hb_000331_420 Hb_000189_130--Hb_000331_420 Hb_000589_170 Hb_000589_170 Hb_000189_130--Hb_000589_170 Hb_001587_040 Hb_001587_040 Hb_000189_130--Hb_001587_040 Hb_001322_230 Hb_001322_230 Hb_000189_130--Hb_001322_230 Hb_005618_080--Hb_001959_060 Hb_005618_080--Hb_005116_100 Hb_005618_080--Hb_000056_310 Hb_005618_080--Hb_006829_080 Hb_172632_060 Hb_172632_060 Hb_005618_080--Hb_172632_060 Hb_007217_010 Hb_007217_010 Hb_000212_250--Hb_007217_010 Hb_004517_030 Hb_004517_030 Hb_000212_250--Hb_004517_030 Hb_153553_040 Hb_153553_040 Hb_000212_250--Hb_153553_040 Hb_011476_030 Hb_011476_030 Hb_000212_250--Hb_011476_030 Hb_000392_450 Hb_000392_450 Hb_000212_250--Hb_000392_450 Hb_005665_090 Hb_005665_090 Hb_000212_250--Hb_005665_090 Hb_004117_040--Hb_006829_080 Hb_004117_040--Hb_172632_060 Hb_004117_040--Hb_001959_060 Hb_005333_200 Hb_005333_200 Hb_004117_040--Hb_005333_200 Hb_002150_130 Hb_002150_130 Hb_004117_040--Hb_002150_130 Hb_002986_090 Hb_002986_090 Hb_004117_040--Hb_002986_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.923449 1.97034 13.2207 4.23854 0.622402 2.06516
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.4317 2.7084 0.298587 2.29578 9.80512

CAGE analysis