Hb_086287_020

Information

Type -
Description -
Location Contig86287: 21833-22057
Sequence    

Annotation

kegg
ID tcc:TCM_007593
description Pentatricopeptide repeat (PPR) superfamily protein
nr
ID XP_012074714.1
description PREDICTED: pentatricopeptide repeat-containing protein At2g03880, mitochondrial [Jatropha curcas]
swissprot
ID Q9SI53
description Pentatricopeptide repeat-containing protein At2g03880, mitochondrial OS=Arabidopsis thaliana GN=PCMP-H44 PE=2 SV=1
trembl
ID A0A067LF48
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_10749 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_086287_020 0.0 - - PREDICTED: pentatricopeptide repeat-containing protein At2g03880, mitochondrial [Jatropha curcas]
2 Hb_098842_010 0.1987972202 - - PREDICTED: uncharacterized protein At4g02000-like [Eucalyptus grandis]
3 Hb_010997_050 0.2116942418 transcription factor TF Family: mTERF unnamed protein product [Coffea canephora]
4 Hb_056531_040 0.2143396233 - - PREDICTED: uncharacterized protein LOC103494239 [Cucumis melo]
5 Hb_000059_090 0.2146080568 - - -
6 Hb_000004_140 0.2247170997 - - -
7 Hb_011537_120 0.2265761237 - - -
8 Hb_053582_010 0.2326533615 - - -
9 Hb_124567_010 0.2356325292 - - -
10 Hb_004282_030 0.2410674911 - - hypothetical protein EUGRSUZ_B01857 [Eucalyptus grandis]
11 Hb_006692_050 0.2451702428 - - Chloroplastic lipocalin [Theobroma cacao]
12 Hb_174005_010 0.2485288861 - - hypothetical protein EUGRSUZ_D00590 [Eucalyptus grandis]
13 Hb_000962_010 0.2528443296 - - -
14 Hb_042026_010 0.2545504767 - - RNA binding protein, putative [Ricinus communis]
15 Hb_007761_010 0.2551822464 - - -
16 Hb_128173_010 0.2559227468 - - PREDICTED: uncharacterized protein LOC104219073 [Nicotiana sylvestris]
17 Hb_001206_070 0.2576155217 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
18 Hb_022593_060 0.2594638918 - - -
19 Hb_105484_010 0.261020161 - - carbohydrate-binding-like fold protein, partial [Manihot esculenta]
20 Hb_010024_010 0.2610860872 - - Ran GTPase binding protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_086287_020 Hb_086287_020 Hb_098842_010 Hb_098842_010 Hb_086287_020--Hb_098842_010 Hb_010997_050 Hb_010997_050 Hb_086287_020--Hb_010997_050 Hb_056531_040 Hb_056531_040 Hb_086287_020--Hb_056531_040 Hb_000059_090 Hb_000059_090 Hb_086287_020--Hb_000059_090 Hb_000004_140 Hb_000004_140 Hb_086287_020--Hb_000004_140 Hb_011537_120 Hb_011537_120 Hb_086287_020--Hb_011537_120 Hb_098842_010--Hb_010997_050 Hb_105484_010 Hb_105484_010 Hb_098842_010--Hb_105484_010 Hb_098842_010--Hb_000004_140 Hb_004282_030 Hb_004282_030 Hb_098842_010--Hb_004282_030 Hb_076583_010 Hb_076583_010 Hb_098842_010--Hb_076583_010 Hb_064951_010 Hb_064951_010 Hb_098842_010--Hb_064951_010 Hb_010997_050--Hb_105484_010 Hb_010997_050--Hb_000004_140 Hb_010997_050--Hb_076583_010 Hb_010997_050--Hb_064951_010 Hb_010997_050--Hb_004282_030 Hb_056531_040--Hb_000059_090 Hb_000115_270 Hb_000115_270 Hb_056531_040--Hb_000115_270 Hb_000002_030 Hb_000002_030 Hb_056531_040--Hb_000002_030 Hb_124567_010 Hb_124567_010 Hb_056531_040--Hb_124567_010 Hb_053582_010 Hb_053582_010 Hb_056531_040--Hb_053582_010 Hb_000295_090 Hb_000295_090 Hb_000059_090--Hb_000295_090 Hb_000707_070 Hb_000707_070 Hb_000059_090--Hb_000707_070 Hb_001235_060 Hb_001235_060 Hb_000059_090--Hb_001235_060 Hb_115578_010 Hb_115578_010 Hb_000059_090--Hb_115578_010 Hb_000004_140--Hb_004282_030 Hb_000004_140--Hb_076583_010 Hb_128173_010 Hb_128173_010 Hb_000004_140--Hb_128173_010 Hb_007761_010 Hb_007761_010 Hb_000004_140--Hb_007761_010 Hb_001014_200 Hb_001014_200 Hb_011537_120--Hb_001014_200 Hb_000875_100 Hb_000875_100 Hb_011537_120--Hb_000875_100 Hb_033883_050 Hb_033883_050 Hb_011537_120--Hb_033883_050 Hb_000003_690 Hb_000003_690 Hb_011537_120--Hb_000003_690 Hb_110486_010 Hb_110486_010 Hb_011537_120--Hb_110486_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.725358 0 0 0 0.887894 11.6153
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.899412 0 0 0 0

CAGE analysis